PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
63301-63350 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | map_l250_m1_e0 | het | 93.1984 | 97.2973 | 89.4309 | 94.7682 | 108 | 3 | 110 | 13 | 1 | 7.6923 | |
| cchapple-custom | INDEL | I16_PLUS | HG002complexvar | het | 97.6379 | 96.5414 | 98.7595 | 67.9804 | 642 | 23 | 1035 | 13 | 7 | 53.8462 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m1_e0 | homalt | 0.0000 | 0.0000 | 7.1429 | 96.2060 | 0 | 0 | 1 | 13 | 2 | 15.3846 | |
| ciseli-custom | INDEL | C1_5 | segdup | homalt | 0.0000 | 0.0000 | 18.7500 | 98.4541 | 0 | 0 | 3 | 13 | 4 | 30.7692 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 23.5294 | 100.0000 | 13.3333 | 89.6552 | 1 | 0 | 2 | 13 | 7 | 53.8462 | |
| ciseli-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 48.0468 | 33.6538 | 83.9506 | 85.2727 | 70 | 138 | 68 | 13 | 10 | 76.9231 | |
| ciseli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 55.5556 | 76.9231 | 43.4783 | 70.8861 | 10 | 3 | 10 | 13 | 3 | 23.0769 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 13.3333 | 100.0000 | 7.1429 | 86.0000 | 1 | 0 | 1 | 13 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | segdup | homalt | 99.2754 | 99.8958 | 98.6626 | 93.6124 | 959 | 1 | 959 | 13 | 12 | 92.3077 | |
| ckim-dragen | INDEL | D16_PLUS | HG002complexvar | het | 98.4311 | 98.3740 | 98.4884 | 69.6006 | 1089 | 18 | 847 | 13 | 2 | 15.3846 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5211 | 99.2995 | 97.7547 | 53.9013 | 567 | 4 | 566 | 13 | 13 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.5778 | 97.7459 | 99.4240 | 60.7000 | 477 | 11 | 2244 | 13 | 9 | 69.2308 | |
| cchapple-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.1287 | 97.5806 | 98.6829 | 71.9841 | 968 | 24 | 974 | 13 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 31.5789 | 93.9490 | 0 | 0 | 6 | 13 | 4 | 30.7692 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | het | 95.6311 | 97.5248 | 93.8095 | 92.1023 | 197 | 5 | 197 | 13 | 1 | 7.6923 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 94.5312 | 99.1803 | 90.2985 | 86.3821 | 121 | 1 | 121 | 13 | 11 | 84.6154 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3235 | 99.1976 | 99.4496 | 87.1665 | 2349 | 19 | 2349 | 13 | 13 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.2827 | 98.9017 | 99.6667 | 74.9583 | 3872 | 43 | 3887 | 13 | 6 | 46.1538 | |
| ckim-dragen | SNP | ti | HG002compoundhet | homalt | 99.8648 | 99.9053 | 99.8243 | 30.4352 | 7387 | 7 | 7388 | 13 | 13 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.7983 | 98.3069 | 99.2946 | 51.3464 | 1800 | 31 | 1830 | 13 | 2 | 15.3846 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7111 | 99.6899 | 99.7323 | 69.3066 | 4822 | 15 | 4843 | 13 | 10 | 76.9231 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8565 | 99.9202 | 99.7929 | 46.2638 | 6263 | 5 | 6265 | 13 | 5 | 38.4615 | |
| ckim-dragen | SNP | ti | map_l125_m0_e0 | homalt | 99.4419 | 99.1761 | 99.7092 | 62.9046 | 4454 | 37 | 4457 | 13 | 12 | 92.3077 | |
| ckim-dragen | SNP | tv | HG002compoundhet | * | 99.7984 | 99.7422 | 99.8546 | 49.3913 | 8900 | 23 | 8925 | 13 | 8 | 61.5385 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.7487 | 98.3509 | 99.1498 | 68.6809 | 1491 | 25 | 1516 | 13 | 2 | 15.3846 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5758 | 99.3915 | 99.7609 | 70.9351 | 5390 | 33 | 5423 | 13 | 4 | 30.7692 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.1580 | 99.2264 | 99.0896 | 88.0562 | 1411 | 11 | 1415 | 13 | 6 | 46.1538 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5758 | 99.3915 | 99.7609 | 70.9351 | 5390 | 33 | 5423 | 13 | 4 | 30.7692 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8475 | 99.4543 | 98.2480 | 73.3285 | 729 | 4 | 729 | 13 | 13 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.9687 | 87.2567 | 99.4808 | 35.1295 | 2376 | 347 | 2491 | 13 | 13 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.5196 | 93.9394 | 99.2455 | 33.2429 | 1519 | 98 | 1710 | 13 | 13 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.4603 | 93.8144 | 99.2597 | 35.4174 | 1547 | 102 | 1743 | 13 | 13 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.7368 | 99.2126 | 90.6475 | 53.5117 | 126 | 1 | 126 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | D16_PLUS | map_siren | * | 93.4849 | 95.8042 | 91.2752 | 95.1513 | 137 | 6 | 136 | 13 | 2 | 15.3846 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2266 | 98.4848 | 96.0000 | 75.6006 | 325 | 5 | 312 | 13 | 7 | 53.8462 | |
| ckim-gatk | INDEL | D6_15 | map_siren | het | 96.8229 | 98.2143 | 95.4704 | 89.1534 | 275 | 5 | 274 | 13 | 2 | 15.3846 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.7735 | 92.5000 | 97.1616 | 81.7457 | 444 | 36 | 445 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.2012 | 96.5257 | 97.8862 | 78.6532 | 639 | 23 | 602 | 13 | 7 | 53.8462 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5230 | 99.2995 | 97.7586 | 67.1946 | 567 | 4 | 567 | 13 | 13 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.9248 | 100.0000 | 92.1687 | 77.1034 | 153 | 0 | 153 | 13 | 12 | 92.3077 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8159 | 99.9133 | 99.7187 | 39.4602 | 4612 | 4 | 4608 | 13 | 3 | 23.0769 | |
| ckim-isaac | INDEL | * | map_l150_m1_e0 | * | 74.6172 | 60.0897 | 98.4088 | 90.7075 | 804 | 534 | 804 | 13 | 5 | 38.4615 | |
| ckim-isaac | INDEL | * | map_l150_m2_e0 | * | 74.8018 | 60.2983 | 98.4919 | 91.3653 | 849 | 559 | 849 | 13 | 5 | 38.4615 | |
| ckim-isaac | INDEL | * | map_l150_m2_e1 | * | 74.8271 | 60.3197 | 98.5227 | 91.3700 | 868 | 571 | 867 | 13 | 5 | 38.4615 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 88.4682 | 80.1441 | 98.7217 | 59.1894 | 1001 | 248 | 1004 | 13 | 6 | 46.1538 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 88.4682 | 80.1441 | 98.7217 | 59.1894 | 1001 | 248 | 1004 | 13 | 6 | 46.1538 | |
| ckim-isaac | INDEL | I16_PLUS | * | hetalt | 65.0682 | 48.5224 | 98.7366 | 42.1910 | 1018 | 1080 | 1016 | 13 | 11 | 84.6154 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 68.5714 | 57.1429 | 85.7143 | 76.6667 | 76 | 57 | 78 | 13 | 9 | 69.2308 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 76.0576 | 66.0714 | 89.6000 | 69.0594 | 111 | 57 | 112 | 13 | 4 | 30.7692 | |