PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62901-62950 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | * | 91.2442 | 93.3962 | 89.1892 | 97.0217 | 99 | 7 | 99 | 12 | 4 | 33.3333 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.4059 | 50.8475 | 71.4286 | 81.4978 | 30 | 29 | 30 | 12 | 12 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 79.6040 | 75.0000 | 84.8101 | 64.2534 | 69 | 23 | 67 | 12 | 12 | 100.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 81.3873 | 91.4286 | 73.3333 | 93.3628 | 32 | 3 | 33 | 12 | 4 | 33.3333 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7680 | 100.0000 | 97.5659 | 60.0486 | 481 | 0 | 481 | 12 | 8 | 66.6667 | |
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.7811 | 99.8095 | 97.7737 | 75.2184 | 524 | 1 | 527 | 12 | 6 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4859 | 99.1534 | 99.8206 | 46.3856 | 6676 | 57 | 6678 | 12 | 5 | 41.6667 | |
| hfeng-pmm1 | INDEL | * | map_l100_m1_e0 | homalt | 99.1863 | 99.3480 | 99.0252 | 81.5332 | 1219 | 8 | 1219 | 12 | 5 | 41.6667 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | homalt | 99.2082 | 99.3656 | 99.0514 | 82.7233 | 1253 | 8 | 1253 | 12 | 5 | 41.6667 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | homalt | 99.2206 | 99.3755 | 99.0661 | 82.8094 | 1273 | 8 | 1273 | 12 | 5 | 41.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.0539 | 11.9565 | 36.8421 | 58.6957 | 11 | 81 | 7 | 12 | 7 | 58.3333 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.3038 | 55.5556 | 36.8421 | 58.6957 | 5 | 4 | 7 | 12 | 7 | 58.3333 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m1_e0 | * | 42.8571 | 42.8571 | 42.8571 | 93.8416 | 3 | 4 | 9 | 12 | 8 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | map_l250_m1_e0 | het | 54.5455 | 75.0000 | 42.8571 | 93.3544 | 3 | 1 | 9 | 12 | 8 | 66.6667 | |
| gduggal-snapvard | SNP | * | map_l250_m1_e0 | homalt | 96.4845 | 93.6663 | 99.4776 | 87.2382 | 2307 | 156 | 2285 | 12 | 9 | 75.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 64.9606 | 65.2174 | 64.7059 | 72.5806 | 45 | 24 | 22 | 12 | 5 | 41.6667 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | * | 95.1872 | 96.7391 | 93.6842 | 95.1568 | 178 | 6 | 178 | 12 | 1 | 8.3333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | het | 93.6000 | 96.6942 | 90.6977 | 93.6233 | 117 | 4 | 117 | 12 | 1 | 8.3333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | * | 95.2128 | 96.7568 | 93.7173 | 95.2381 | 179 | 6 | 179 | 12 | 1 | 8.3333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | het | 93.6508 | 96.7213 | 90.7692 | 93.7137 | 118 | 4 | 118 | 12 | 1 | 8.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | het | 90.7407 | 92.4528 | 89.0909 | 90.5902 | 98 | 8 | 98 | 12 | 2 | 16.6667 | |
| gduggal-snapfb | INDEL | I1_5 | map_siren | hetalt | 78.6144 | 75.8929 | 81.5385 | 92.3439 | 85 | 27 | 53 | 12 | 9 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 52.1262 | 44.7059 | 62.5000 | 60.0000 | 38 | 47 | 20 | 12 | 9 | 75.0000 | |
| gduggal-snapfb | INDEL | C1_5 | HG002complexvar | het | 65.9341 | 85.7143 | 53.5714 | 70.5263 | 6 | 1 | 15 | 13 | 3 | 23.0769 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 34.7826 | 66.6667 | 23.5294 | 77.0270 | 2 | 1 | 4 | 13 | 3 | 23.0769 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 86.5961 | 80.0752 | 94.2731 | 78.2359 | 213 | 53 | 214 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m1_e0 | homalt | 88.8389 | 81.4189 | 97.7470 | 86.4139 | 482 | 110 | 564 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e0 | homalt | 89.1147 | 81.8331 | 97.8188 | 86.9556 | 500 | 111 | 583 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m2_e1 | homalt | 88.9945 | 81.6129 | 97.8441 | 87.0712 | 506 | 114 | 590 | 13 | 1 | 7.6923 | |
| gduggal-snapplat | INDEL | D1_5 | map_siren | hetalt | 34.1880 | 23.8095 | 60.6061 | 98.0287 | 20 | 64 | 20 | 13 | 7 | 53.8462 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 19.0476 | 12.1951 | 43.4783 | 96.2480 | 10 | 72 | 10 | 13 | 4 | 30.7692 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | * | 77.9487 | 71.6981 | 85.3933 | 98.3386 | 76 | 30 | 76 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e0 | * | 78.8462 | 72.5664 | 86.3158 | 98.4655 | 82 | 31 | 82 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | * | 79.0476 | 72.8070 | 86.4583 | 98.4991 | 83 | 31 | 83 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 33.8229 | 23.4568 | 60.6061 | 79.8780 | 19 | 62 | 20 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 10.5305 | 5.9140 | 48.0000 | 69.1358 | 11 | 175 | 12 | 13 | 2 | 15.3846 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | homalt | 96.2308 | 92.8014 | 99.9235 | 62.6446 | 16991 | 1318 | 16974 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | homalt | 96.2554 | 92.8463 | 99.9243 | 62.6415 | 17171 | 1323 | 17154 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_siren | homalt | 96.8214 | 93.9095 | 99.9197 | 58.2133 | 16190 | 1050 | 16181 | 13 | 5 | 38.4615 | |
| gduggal-snapvard | INDEL | * | map_l100_m0_e0 | homalt | 91.5445 | 85.8546 | 98.0422 | 79.7808 | 437 | 72 | 651 | 13 | 9 | 69.2308 | |
| gduggal-snapvard | INDEL | * | map_l125_m1_e0 | homalt | 92.3976 | 87.0219 | 98.4813 | 80.4522 | 637 | 95 | 843 | 13 | 11 | 84.6154 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e0 | homalt | 92.4285 | 87.0249 | 98.5475 | 81.2093 | 664 | 99 | 882 | 13 | 11 | 84.6154 | |
| gduggal-snapvard | INDEL | * | map_l125_m2_e1 | homalt | 92.3972 | 86.9509 | 98.5714 | 81.2719 | 673 | 101 | 897 | 13 | 11 | 84.6154 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 13.3333 | 83.5165 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 13.3333 | 82.7586 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 62.8571 | 79.8851 | 0 | 0 | 22 | 13 | 2 | 15.3846 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 59.3750 | 80.0000 | 0 | 0 | 19 | 13 | 2 | 15.3846 | |
| gduggal-snapfb | INDEL | I6_15 | segdup | * | 85.8304 | 80.5714 | 91.8239 | 87.1255 | 141 | 34 | 146 | 13 | 13 | 100.0000 | |