PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62801-62850 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.0428 | 96.9002 | 99.2126 | 71.4874 | 1563 | 50 | 1512 | 12 | 7 | 58.3333 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.9072 | 100.0000 | 94.0000 | 65.5766 | 188 | 0 | 188 | 12 | 11 | 91.6667 | |
| hfeng-pmm3 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.0815 | 96.6180 | 99.5899 | 68.7793 | 2914 | 102 | 2914 | 12 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.5415 | 97.2452 | 99.8728 | 66.2892 | 9425 | 267 | 9425 | 12 | 5 | 41.6667 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5241 | 97.2660 | 99.8150 | 78.5959 | 6475 | 182 | 6476 | 12 | 1 | 8.3333 | |
| hfeng-pmm3 | SNP | ti | map_l150_m0_e0 | homalt | 99.6199 | 99.6740 | 99.5658 | 75.7331 | 2752 | 9 | 2752 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | map_l100_m0_e0 | homalt | 99.6488 | 99.6100 | 99.6877 | 65.3002 | 3831 | 15 | 3831 | 12 | 4 | 33.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.7297 | 92.2222 | 87.3684 | 93.0250 | 83 | 7 | 83 | 12 | 2 | 16.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.8990 | 91.7526 | 88.1188 | 92.8011 | 89 | 8 | 89 | 12 | 2 | 16.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4967 | 94.8485 | 96.1538 | 71.6106 | 313 | 17 | 300 | 12 | 8 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.8285 | 93.5953 | 98.1707 | 81.2678 | 643 | 44 | 644 | 12 | 6 | 50.0000 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 65.0000 | 86.6667 | 52.0000 | 85.0299 | 13 | 2 | 13 | 12 | 1 | 8.3333 | |
| ckim-dragen | INDEL | * | func_cds | * | 98.4444 | 99.5506 | 97.3626 | 49.5006 | 443 | 2 | 443 | 12 | 1 | 8.3333 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9159 | 99.9380 | 99.8938 | 56.3777 | 11289 | 7 | 11284 | 12 | 11 | 91.6667 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.1652 | 96.3415 | 86.5169 | 61.6379 | 79 | 3 | 77 | 12 | 12 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | het | 94.0580 | 94.2708 | 93.8462 | 89.3033 | 181 | 11 | 183 | 12 | 2 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.1021 | 88.9925 | 97.6096 | 61.2654 | 477 | 59 | 490 | 12 | 11 | 91.6667 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.5313 | 97.5124 | 99.5716 | 47.3892 | 588 | 15 | 2789 | 12 | 10 | 83.3333 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.8750 | 100.0000 | 93.9394 | 65.3240 | 188 | 0 | 186 | 12 | 12 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.6256 | 98.1818 | 99.0734 | 84.3863 | 1242 | 23 | 1283 | 12 | 10 | 83.3333 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 36.8421 | 96.7687 | 0 | 0 | 7 | 12 | 1 | 8.3333 | |
| ciseli-custom | INDEL | C6_15 | * | het | 50.0000 | 42.8571 | 60.0000 | 97.5610 | 3 | 4 | 18 | 12 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 29.4118 | 97.1808 | 0 | 0 | 5 | 12 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 20.0000 | 89.4366 | 0 | 0 | 3 | 12 | 1 | 8.3333 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.4155 | 81.1111 | 94.7826 | 52.9652 | 219 | 51 | 218 | 12 | 11 | 91.6667 | |
| ciseli-custom | INDEL | D16_PLUS | map_siren | het | 66.7957 | 57.6923 | 79.3103 | 83.8440 | 45 | 33 | 46 | 12 | 5 | 41.6667 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | * | 70.3704 | 65.5172 | 76.0000 | 92.2118 | 38 | 20 | 38 | 12 | 9 | 75.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m0_e0 | het | 62.0843 | 60.6061 | 63.6364 | 98.5739 | 20 | 13 | 21 | 12 | 1 | 8.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | homalt | 68.9655 | 76.9231 | 62.5000 | 90.7781 | 20 | 6 | 20 | 12 | 10 | 83.3333 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 33.7553 | 24.2424 | 55.5556 | 91.2903 | 16 | 50 | 15 | 12 | 2 | 16.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 14.2857 | 100.0000 | 7.6923 | 87.1287 | 1 | 0 | 1 | 12 | 10 | 83.3333 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 25.2427 | 15.4762 | 68.4211 | 87.0748 | 26 | 142 | 26 | 12 | 8 | 66.6667 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | * | 52.1739 | 54.5455 | 50.0000 | 52.0000 | 12 | 10 | 12 | 12 | 9 | 75.0000 | |
| ckim-dragen | SNP | tv | map_l100_m0_e0 | homalt | 99.4789 | 99.2720 | 99.6867 | 59.7308 | 3818 | 28 | 3818 | 12 | 10 | 83.3333 | |
| ckim-dragen | SNP | tv | map_l150_m1_e0 | homalt | 99.5559 | 99.4171 | 99.6950 | 66.7792 | 3923 | 23 | 3923 | 12 | 10 | 83.3333 | |
| ckim-dragen | SNP | tv | map_l150_m2_e0 | homalt | 99.5708 | 99.4367 | 99.7053 | 69.4134 | 4060 | 23 | 4060 | 12 | 10 | 83.3333 | |
| ckim-dragen | SNP | tv | map_l150_m2_e1 | homalt | 99.5761 | 99.4436 | 99.7089 | 69.3912 | 4111 | 23 | 4111 | 12 | 10 | 83.3333 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6131 | 99.4059 | 99.8211 | 49.8317 | 6693 | 40 | 6695 | 12 | 7 | 58.3333 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.3855 | 91.9540 | 86.9565 | 95.3252 | 80 | 7 | 80 | 12 | 4 | 33.3333 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.7297 | 92.2222 | 87.3684 | 95.8533 | 83 | 7 | 83 | 12 | 4 | 33.3333 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.8990 | 91.7526 | 88.1188 | 95.6893 | 89 | 8 | 89 | 12 | 4 | 33.3333 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.8218 | 97.2441 | 98.4064 | 67.2181 | 741 | 21 | 741 | 12 | 7 | 58.3333 | |
| ckim-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.4466 | 99.9145 | 98.9831 | 63.0094 | 1168 | 1 | 1168 | 12 | 11 | 91.6667 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 95.7529 | 96.1240 | 95.3846 | 89.1304 | 248 | 10 | 248 | 12 | 2 | 16.6667 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m1_e0 | het | 94.2529 | 97.6190 | 91.1111 | 91.9355 | 123 | 3 | 123 | 12 | 2 | 16.6667 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 95.6522 | 95.8333 | 95.4717 | 89.6927 | 253 | 11 | 253 | 12 | 2 | 16.6667 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 94.0741 | 96.9466 | 91.3669 | 92.3416 | 127 | 4 | 127 | 12 | 2 | 16.6667 | |