PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62601-62650 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | het | 79.8362 | 82.9787 | 76.9231 | 92.2619 | 39 | 8 | 40 | 12 | 7 | 58.3333 | |
| gduggal-bwaplat | INDEL | * | segdup | het | 93.7455 | 88.9495 | 99.0881 | 97.0073 | 1304 | 162 | 1304 | 12 | 6 | 50.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | * | hetalt | 80.2709 | 67.4599 | 99.0881 | 50.5635 | 1304 | 629 | 1304 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | HG002complexvar | homalt | 84.4618 | 76.1246 | 94.8498 | 71.9277 | 220 | 69 | 221 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 80.2465 | 67.4262 | 99.0868 | 50.5085 | 1302 | 629 | 1302 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 86.6522 | 77.1817 | 98.7718 | 69.3057 | 964 | 285 | 965 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 83.0162 | 71.4904 | 98.9726 | 45.1128 | 1156 | 461 | 1156 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 82.5318 | 70.7702 | 98.9822 | 46.3359 | 1167 | 482 | 1167 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 80.2465 | 67.4262 | 99.0868 | 50.5085 | 1302 | 629 | 1302 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 86.6522 | 77.1817 | 98.7718 | 69.3057 | 964 | 285 | 965 | 12 | 10 | 83.3333 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 54.7264 | 68.7500 | 45.4545 | 94.3445 | 11 | 5 | 10 | 12 | 1 | 8.3333 | |
| eyeh-varpipe | SNP | tv | HG002complexvar | hetalt | 99.6700 | 99.6774 | 99.6626 | 29.8422 | 309 | 1 | 3545 | 12 | 11 | 91.6667 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | homalt | 99.8444 | 99.8231 | 99.8658 | 65.0500 | 9027 | 16 | 8931 | 12 | 4 | 33.3333 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e0 | homalt | 99.8474 | 99.8264 | 99.8684 | 67.1566 | 9198 | 16 | 9105 | 12 | 4 | 33.3333 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e1 | homalt | 99.8487 | 99.8280 | 99.8695 | 67.1866 | 9286 | 16 | 9182 | 12 | 4 | 33.3333 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 85.4009 | 81.1159 | 90.1639 | 84.0314 | 189 | 44 | 110 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | het | 94.9769 | 93.5484 | 96.4497 | 90.9601 | 319 | 22 | 326 | 12 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | segdup | homalt | 98.7493 | 98.7500 | 98.7487 | 93.7209 | 948 | 12 | 947 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 84.7595 | 74.5335 | 98.2379 | 37.2350 | 1358 | 464 | 669 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 93.3120 | 87.8747 | 99.4664 | 36.3431 | 7182 | 991 | 2237 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m0_e0 | het | 96.8208 | 97.1014 | 96.5418 | 87.1908 | 335 | 10 | 335 | 12 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | HG002complexvar | hetalt | 88.4177 | 83.7117 | 93.6842 | 66.0714 | 848 | 165 | 178 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.6234 | 85.8268 | 91.6084 | 71.3427 | 109 | 18 | 131 | 12 | 5 | 41.6667 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 70.5314 | 59.8361 | 85.8824 | 65.4472 | 73 | 49 | 73 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 53.3784 | 38.5366 | 86.8132 | 64.4531 | 79 | 126 | 79 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 53.3784 | 38.5366 | 86.8132 | 64.4531 | 79 | 126 | 79 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.5601 | 89.5000 | 93.7173 | 65.2095 | 179 | 21 | 179 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.7249 | 90.0709 | 97.6879 | 63.9583 | 508 | 56 | 507 | 12 | 9 | 75.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | * | 97.5594 | 96.5517 | 98.5882 | 86.5761 | 840 | 30 | 838 | 12 | 2 | 16.6667 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.0400 | 86.8852 | 91.3043 | 57.9268 | 106 | 16 | 126 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 78.6765 | 69.9346 | 89.9160 | 64.3713 | 107 | 46 | 107 | 12 | 10 | 83.3333 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 78.1733 | 64.2951 | 99.6920 | 43.7482 | 3904 | 2168 | 3884 | 12 | 10 | 83.3333 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 29.4118 | 96.9314 | 0 | 0 | 5 | 12 | 3 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 75.1438 | 70.5882 | 80.3279 | 96.6630 | 48 | 20 | 49 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.1166 | 86.3636 | 76.4706 | 96.8460 | 38 | 6 | 39 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e0 | * | 70.0000 | 77.7778 | 63.6364 | 95.8750 | 21 | 6 | 21 | 12 | 3 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m2_e1 | het | 72.0000 | 90.0000 | 60.0000 | 95.8791 | 18 | 2 | 18 | 12 | 3 | 25.0000 | |
| gduggal-bwavard | INDEL | D1_5 | HG002compoundhet | homalt | 90.4952 | 86.5979 | 94.7598 | 55.0098 | 252 | 39 | 217 | 12 | 12 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 58.4346 | 41.3660 | 99.4845 | 45.9233 | 2350 | 3331 | 2316 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 56.0471 | 39.0837 | 99.0276 | 46.9019 | 1237 | 1928 | 1222 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | * | 77.0833 | 78.7234 | 75.5102 | 94.6389 | 37 | 10 | 37 | 12 | 6 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | het | 75.8621 | 91.6667 | 64.7059 | 95.7500 | 22 | 2 | 22 | 12 | 6 | 50.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | homalt | 98.6148 | 97.3744 | 99.8872 | 66.1535 | 10755 | 290 | 10628 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e0 | homalt | 98.6173 | 97.3763 | 99.8904 | 68.4929 | 11060 | 298 | 10932 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e1 | homalt | 98.6250 | 97.3905 | 99.8913 | 68.5234 | 11159 | 299 | 11030 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | homalt | 98.6247 | 97.4478 | 99.8303 | 71.2444 | 7140 | 187 | 7059 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | homalt | 98.6236 | 97.4396 | 99.8368 | 73.2710 | 7421 | 195 | 7339 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e1 | homalt | 98.6309 | 97.4522 | 99.8384 | 73.3079 | 7497 | 196 | 7414 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l100_m1_e0 | homalt | 98.7927 | 97.7441 | 99.8639 | 61.4588 | 8839 | 204 | 8807 | 12 | 10 | 83.3333 | |
| gduggal-snapfb | INDEL | * | tech_badpromoters | * | 78.7330 | 75.0000 | 82.8571 | 54.8387 | 57 | 19 | 58 | 12 | 2 | 16.6667 | |