PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62401-62450 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6173 | 95.2922 | 97.9798 | 63.9563 | 587 | 29 | 582 | 12 | 11 | 91.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | * | 98.1974 | 97.7984 | 98.5998 | 82.9317 | 844 | 19 | 845 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | * | 97.7583 | 97.2106 | 98.3122 | 87.0161 | 697 | 20 | 699 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8940 | 97.3788 | 98.4148 | 87.6287 | 743 | 20 | 745 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | homalt | 99.4894 | 100.0000 | 98.9839 | 62.5911 | 1169 | 0 | 1169 | 12 | 12 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | homalt | 98.0952 | 100.0000 | 96.2617 | 68.7743 | 309 | 0 | 309 | 12 | 11 | 91.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | * | 97.0226 | 96.4427 | 97.6096 | 87.2589 | 488 | 18 | 490 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | * | 97.0975 | 96.5318 | 97.6699 | 88.6863 | 501 | 18 | 503 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e1 | * | 97.1634 | 96.6102 | 97.7230 | 88.7825 | 513 | 18 | 515 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.8218 | 96.4958 | 99.1848 | 75.0551 | 1487 | 54 | 1460 | 12 | 6 | 50.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5867 | 99.3693 | 99.8051 | 53.1359 | 6145 | 39 | 6145 | 12 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3619 | 99.0333 | 99.6927 | 53.9179 | 3893 | 38 | 3893 | 12 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | map_l100_m0_e0 | homalt | 99.1768 | 98.6739 | 99.6848 | 64.1086 | 3795 | 51 | 3795 | 12 | 10 | 83.3333 | |
| rpoplin-dv42 | SNP | tv | map_l125_m1_e0 | homalt | 99.4262 | 99.0614 | 99.7937 | 67.2577 | 5805 | 55 | 5805 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e0 | homalt | 99.4329 | 99.0693 | 99.7991 | 69.7738 | 5961 | 56 | 5961 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m2_e1 | homalt | 99.4382 | 99.0780 | 99.8010 | 69.8334 | 6018 | 56 | 6018 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | segdup | homalt | 99.7378 | 99.8456 | 99.6302 | 90.4939 | 3233 | 5 | 3233 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8805 | 99.8672 | 99.8937 | 56.0776 | 11281 | 15 | 11280 | 12 | 12 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | het | 97.2591 | 96.5928 | 97.9346 | 88.6168 | 567 | 20 | 569 | 12 | 3 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | * | 97.5703 | 97.4708 | 97.6699 | 99.3659 | 501 | 13 | 503 | 12 | 4 | 33.3333 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | het | 96.0441 | 95.6012 | 96.4912 | 91.7411 | 326 | 15 | 330 | 12 | 2 | 16.6667 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | * | 83.6913 | 81.6092 | 85.8824 | 87.5549 | 71 | 16 | 73 | 12 | 6 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8276 | 97.3501 | 98.3099 | 87.6436 | 698 | 19 | 698 | 12 | 5 | 41.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m2_e0 | * | 97.9592 | 97.5098 | 98.4127 | 88.2536 | 744 | 19 | 744 | 12 | 5 | 41.6667 | |
| ndellapenna-hhga | INDEL | D1_5 | map_siren | homalt | 99.1884 | 99.4007 | 98.9770 | 79.1578 | 1161 | 7 | 1161 | 12 | 11 | 91.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9203 | 97.9167 | 97.9239 | 65.8796 | 564 | 12 | 566 | 12 | 9 | 75.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4553 | 99.7222 | 99.1897 | 69.2866 | 1436 | 4 | 1469 | 12 | 1 | 8.3333 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1418 | 99.5624 | 98.7248 | 70.1554 | 910 | 4 | 929 | 12 | 1 | 8.3333 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 57.8606 | 40.8740 | 99.0058 | 44.7850 | 1113 | 1610 | 1195 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | * | map_l250_m0_e0 | * | 40.7080 | 29.4872 | 65.7143 | 95.2381 | 23 | 55 | 23 | 12 | 7 | 58.3333 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 89.9023 | 87.8981 | 92.0000 | 66.5924 | 138 | 19 | 138 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 80.4581 | 67.4235 | 99.7403 | 24.8984 | 4603 | 2224 | 4609 | 12 | 12 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.3255 | 91.3534 | 95.3846 | 81.6901 | 243 | 23 | 248 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 67.9265 | 61.4035 | 76.0000 | 99.4084 | 35 | 22 | 38 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | * | 51.0018 | 42.5532 | 63.6364 | 88.1295 | 20 | 27 | 21 | 12 | 7 | 58.3333 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | * | 67.3310 | 58.9041 | 78.5714 | 86.1728 | 43 | 30 | 44 | 12 | 8 | 66.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 69.6084 | 54.3247 | 96.8586 | 71.6196 | 358 | 301 | 370 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 69.6084 | 54.3247 | 96.8586 | 71.6196 | 358 | 301 | 370 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m0_e0 | homalt | 60.1770 | 50.7463 | 73.9130 | 82.8358 | 34 | 33 | 34 | 12 | 11 | 91.6667 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 84.5634 | 83.9506 | 85.1852 | 72.6351 | 68 | 13 | 69 | 12 | 12 | 100.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.0343 | 69.6970 | 78.9474 | 95.0607 | 46 | 20 | 45 | 12 | 3 | 25.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 45.4545 | 100.0000 | 29.4118 | 88.2759 | 6 | 0 | 5 | 12 | 12 | 100.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | * | 89.2857 | 100.0000 | 80.6452 | 90.2054 | 1 | 0 | 50 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | het | 83.9237 | 76.2376 | 93.3333 | 96.6468 | 154 | 48 | 168 | 12 | 11 | 91.6667 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 81.3204 | 72.2826 | 92.9412 | 97.5589 | 133 | 51 | 158 | 12 | 10 | 83.3333 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 81.4309 | 72.4324 | 92.9825 | 97.5939 | 134 | 51 | 159 | 12 | 10 | 83.3333 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.3374 | 97.6744 | 77.3585 | 67.4847 | 42 | 1 | 41 | 12 | 5 | 41.6667 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 54.0541 | 83.3333 | 40.0000 | 98.5795 | 5 | 1 | 8 | 12 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 80.3712 | 78.7234 | 82.0896 | 94.0603 | 37 | 10 | 55 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 75.9428 | 62.2530 | 97.3510 | 93.4867 | 315 | 191 | 441 | 12 | 8 | 66.6667 | |