PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62051-62100 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | * | map_l250_m2_e1 | het | 96.4506 | 96.6825 | 96.2199 | 94.9010 | 204 | 7 | 280 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | * | map_siren | hetalt | 51.9925 | 36.0324 | 93.3333 | 92.3928 | 89 | 158 | 154 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 68.5714 | 93.3712 | 0 | 0 | 24 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 50.0000 | 94.2257 | 0 | 0 | 11 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 94.2257 | 0 | 0 | 11 | 11 | 9 | 81.8182 | |
| ckim-vqsr | SNP | ti | map_l250_m0_e0 | * | 55.0131 | 38.2482 | 97.9439 | 98.4056 | 524 | 846 | 524 | 11 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m0_e0 | het | 62.2449 | 45.7173 | 97.4886 | 98.4812 | 427 | 507 | 427 | 11 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6600 | 99.6762 | 99.6439 | 69.2790 | 3078 | 10 | 3078 | 11 | 9 | 81.8182 | |
| dgrover-gatk | INDEL | * | map_l100_m0_e0 | homalt | 98.1391 | 98.4283 | 97.8516 | 85.3798 | 501 | 8 | 501 | 11 | 5 | 45.4545 | |
| dgrover-gatk | INDEL | * | map_l250_m0_e0 | * | 90.1235 | 93.5897 | 86.9048 | 97.9749 | 73 | 5 | 73 | 11 | 2 | 18.1818 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 85.7754 | 93.4783 | 79.2453 | 95.6699 | 43 | 3 | 42 | 11 | 4 | 36.3636 | |
| dgrover-gatk | INDEL | D16_PLUS | map_siren | het | 91.2085 | 96.1538 | 86.7470 | 95.9234 | 75 | 3 | 72 | 11 | 2 | 18.1818 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5585 | 98.2609 | 96.8661 | 90.0256 | 339 | 6 | 340 | 11 | 1 | 9.0909 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.5006 | 96.2099 | 96.7930 | 60.2549 | 330 | 13 | 332 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | segdup | het | 89.9018 | 91.3043 | 88.5417 | 91.7241 | 84 | 8 | 85 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 74.4494 | 60.3774 | 97.0745 | 67.4459 | 352 | 231 | 365 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.3250 | 96.7213 | 84.7222 | 88.5350 | 59 | 2 | 61 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 55.5615 | 38.9075 | 97.1429 | 49.6732 | 349 | 548 | 374 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9157 | 97.2833 | 98.5564 | 70.7710 | 752 | 21 | 751 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0188 | 98.3264 | 97.7131 | 72.8249 | 470 | 8 | 470 | 11 | 9 | 81.8182 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.2079 | 95.0820 | 91.4062 | 63.0058 | 116 | 6 | 117 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 77.2779 | 63.3540 | 99.0460 | 46.3471 | 1122 | 649 | 1142 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.0777 | 90.3226 | 84.0580 | 83.3333 | 56 | 6 | 58 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 77.1048 | 63.8066 | 97.4057 | 47.3945 | 409 | 232 | 413 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | * | 76.2909 | 67.5439 | 87.6404 | 81.8367 | 77 | 37 | 78 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | * | 76.7503 | 68.1034 | 87.9121 | 83.6036 | 79 | 37 | 80 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | * | 76.7503 | 68.1034 | 87.9121 | 83.9789 | 79 | 37 | 80 | 11 | 10 | 90.9091 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 59.4595 | 73.3333 | 50.0000 | 96.4630 | 11 | 4 | 11 | 11 | 7 | 63.6364 | |
| qzeng-custom | INDEL | C16_PLUS | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 83.8235 | 0 | 0 | 0 | 11 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 74.5342 | 66.6667 | 84.5070 | 97.7222 | 2 | 1 | 60 | 11 | 1 | 9.0909 | |
| qzeng-custom | INDEL | C6_15 | * | het | 87.0588 | 100.0000 | 77.0833 | 96.5368 | 7 | 0 | 37 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.2168 | 80.4348 | 80.0000 | 57.3643 | 37 | 9 | 44 | 11 | 6 | 54.5455 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 80.5528 | 72.7273 | 90.2655 | 98.0877 | 88 | 33 | 102 | 11 | 9 | 81.8182 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 80.6897 | 72.9508 | 90.2655 | 98.1239 | 89 | 33 | 102 | 11 | 9 | 81.8182 | |
| qzeng-custom | INDEL | D1_5 | map_siren | homalt | 94.1879 | 89.8116 | 99.0126 | 74.9663 | 1049 | 119 | 1103 | 11 | 11 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 78.5615 | 65.6891 | 97.7083 | 41.1043 | 224 | 117 | 469 | 11 | 8 | 72.7273 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 80.0302 | 67.8322 | 97.5771 | 39.4667 | 194 | 92 | 443 | 11 | 8 | 72.7273 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 79.5886 | 67.1053 | 97.7778 | 44.5067 | 255 | 125 | 484 | 11 | 8 | 72.7273 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 94.4444 | 0 | 0 | 0 | 11 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I16_PLUS | map_l100_m0_e0 | * | 65.3061 | 72.7273 | 59.2593 | 88.7967 | 8 | 3 | 16 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | * | 66.6667 | 66.6667 | 66.6667 | 89.5899 | 10 | 5 | 22 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | * | 66.6667 | 66.6667 | 66.6667 | 89.6875 | 10 | 5 | 22 | 11 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | * | 85.3598 | 91.4894 | 80.0000 | 93.4132 | 43 | 4 | 44 | 11 | 1 | 9.0909 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8890 | 98.8482 | 98.9300 | 77.8496 | 944 | 11 | 1017 | 11 | 2 | 18.1818 | |
| qzeng-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 76.9125 | 63.8710 | 96.6463 | 93.7984 | 198 | 112 | 317 | 11 | 6 | 54.5455 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m1_e0 | homalt | 99.8049 | 99.6715 | 99.9386 | 57.1476 | 17901 | 59 | 17900 | 11 | 11 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | * | 98.1288 | 96.4862 | 99.8283 | 59.5773 | 6398 | 233 | 6396 | 11 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 44.1176 | 75.0000 | 31.2500 | 71.9298 | 6 | 2 | 5 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 26.6667 | 100.0000 | 15.3846 | 92.8177 | 2 | 0 | 2 | 11 | 2 | 18.1818 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l150_m1_e0 | * | 59.4595 | 73.3333 | 50.0000 | 93.6047 | 11 | 4 | 11 | 11 | 2 | 18.1818 | |