PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61901-61950 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | * | 88.0187 | 87.0588 | 89.0000 | 89.9598 | 74 | 11 | 89 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 15.3846 | 12.0000 | 21.4286 | 44.0000 | 3 | 22 | 3 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.8881 | 14.3987 | 91.6667 | 67.0000 | 91 | 541 | 121 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m1_e0 | het | 97.0787 | 96.6555 | 97.5057 | 86.7845 | 289 | 10 | 430 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0183 | 96.4401 | 97.6035 | 87.5509 | 298 | 11 | 448 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | het | 97.0790 | 96.5300 | 97.6344 | 87.6527 | 306 | 11 | 454 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | * | 76.9628 | 67.9245 | 88.7755 | 80.5169 | 36 | 17 | 87 | 11 | 9 | 81.8182 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | * | 77.1277 | 67.9245 | 89.2157 | 81.4208 | 36 | 17 | 91 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | INDEL | I6_15 | HG002complexvar | homalt | 84.0374 | 73.1466 | 98.7385 | 35.6458 | 888 | 326 | 861 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | * | 55.5556 | 66.6667 | 47.6190 | 92.3913 | 10 | 5 | 10 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l125_m0_e0 | het | 57.1429 | 88.8889 | 42.1053 | 92.5490 | 8 | 1 | 8 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m1_e0 | * | 69.0909 | 76.0000 | 63.3333 | 93.1350 | 19 | 6 | 19 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e0 | * | 69.0909 | 76.0000 | 63.3333 | 94.0358 | 19 | 6 | 19 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | INDEL | I6_15 | map_l150_m2_e1 | * | 71.1864 | 77.7778 | 65.6250 | 93.8697 | 21 | 6 | 21 | 11 | 4 | 36.3636 | |
| gduggal-bwavard | SNP | tv | HG002compoundhet | homalt | 92.4344 | 86.2456 | 99.5802 | 40.9644 | 2922 | 466 | 2609 | 11 | 8 | 72.7273 | |
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | homalt | 98.7755 | 97.7645 | 99.8076 | 66.5926 | 5729 | 131 | 5706 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | homalt | 98.7568 | 97.7231 | 99.8125 | 68.8568 | 5880 | 137 | 5857 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | homalt | 98.7179 | 97.6457 | 99.8140 | 68.9260 | 5931 | 143 | 5903 | 11 | 9 | 81.8182 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | homalt | 96.1581 | 94.8052 | 97.5501 | 91.6231 | 438 | 24 | 438 | 11 | 8 | 72.7273 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | homalt | 96.3119 | 95.0104 | 97.6496 | 92.1345 | 457 | 24 | 457 | 11 | 8 | 72.7273 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e1 | homalt | 96.3955 | 95.1220 | 97.7035 | 92.1035 | 468 | 24 | 468 | 11 | 8 | 72.7273 | |
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | homalt | 99.3830 | 98.9218 | 99.8485 | 72.6540 | 7248 | 79 | 7248 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e0 | homalt | 99.3999 | 98.9496 | 99.8542 | 74.6089 | 7536 | 80 | 7536 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e1 | homalt | 99.3993 | 98.9471 | 99.8557 | 74.6736 | 7612 | 81 | 7612 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.5455 | 83.3333 | 76.0870 | 91.5905 | 35 | 7 | 35 | 11 | 1 | 9.0909 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 59.5825 | 43.7326 | 93.4524 | 71.9533 | 157 | 202 | 157 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.6847 | 76.6260 | 97.1722 | 71.5227 | 377 | 115 | 378 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | * | 73.0645 | 57.9655 | 98.8004 | 94.3818 | 906 | 657 | 906 | 11 | 2 | 18.1818 | |
| gduggal-bwaplat | INDEL | * | map_siren | homalt | 83.1471 | 71.4501 | 99.4235 | 85.0984 | 1897 | 758 | 1897 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.3755 | 75.1159 | 98.8810 | 48.3447 | 972 | 322 | 972 | 11 | 10 | 90.9091 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8366 | 99.9727 | 99.7008 | 51.3048 | 3665 | 1 | 3665 | 11 | 11 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_siren | * | 97.2310 | 96.6601 | 97.8088 | 86.7125 | 492 | 17 | 491 | 11 | 3 | 27.2727 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0355 | 98.4951 | 99.5819 | 70.6787 | 2618 | 40 | 2620 | 11 | 3 | 27.2727 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.5300 | 100.0000 | 93.2927 | 77.6871 | 153 | 0 | 153 | 11 | 10 | 90.9091 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 91.2000 | 95.3943 | 0 | 1 | 114 | 11 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 91.2000 | 95.3943 | 0 | 1 | 114 | 11 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 87.5000 | 93.7853 | 0 | 1 | 77 | 11 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002compoundhet | hetalt | 94.9583 | 90.9232 | 99.3682 | 22.2073 | 1753 | 175 | 1730 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.3465 | 85.0256 | 98.6826 | 42.3343 | 829 | 146 | 824 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 90.6524 | 84.2181 | 98.1513 | 37.9562 | 587 | 110 | 584 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.3412 | 90.9091 | 98.0427 | 61.3214 | 560 | 56 | 551 | 11 | 10 | 90.9091 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.4888 | 94.9264 | 98.1034 | 64.0867 | 580 | 31 | 569 | 11 | 9 | 81.8182 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2002 | 98.7477 | 99.6569 | 58.1790 | 3233 | 41 | 3195 | 11 | 7 | 63.6364 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002complexvar | homalt | 95.1273 | 94.1748 | 96.0993 | 53.7705 | 291 | 18 | 271 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 85.8671 | 76.8612 | 97.2637 | 69.0054 | 382 | 115 | 391 | 11 | 10 | 90.9091 | |
| ltrigg-rtg1 | INDEL | I1_5 | HG002complexvar | hetalt | 97.3210 | 95.3071 | 99.4220 | 76.8604 | 1645 | 81 | 1892 | 11 | 11 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.4810 | 89.2361 | 95.9707 | 74.6988 | 257 | 31 | 262 | 11 | 1 | 9.0909 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9133 | 99.8812 | 99.9455 | 56.3725 | 20175 | 24 | 20175 | 11 | 7 | 63.6364 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.0950 | 99.1848 | 99.0054 | 86.2506 | 1095 | 9 | 1095 | 11 | 4 | 36.3636 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8235 | 99.1667 | 98.4828 | 87.3627 | 714 | 6 | 714 | 11 | 4 | 36.3636 | |