PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61501-61550 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 37.1824 | 23.5849 | 87.8049 | 62.7273 | 25 | 81 | 72 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6173 | 93.5146 | 97.8166 | 73.7084 | 447 | 31 | 448 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.1652 | 97.0888 | 99.2658 | 70.8788 | 1334 | 40 | 1352 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.3333 | 66.6667 | 72.2222 | 89.6254 | 34 | 17 | 26 | 10 | 3 | 30.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | het | 96.7920 | 94.9807 | 98.6737 | 82.4610 | 738 | 39 | 744 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | het | 96.7924 | 94.9559 | 98.7013 | 83.9181 | 753 | 40 | 760 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e1 | het | 96.7959 | 94.9383 | 98.7277 | 84.0114 | 769 | 41 | 776 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | * | 97.6843 | 96.6265 | 98.7654 | 85.1240 | 802 | 28 | 800 | 10 | 2 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e0 | * | 97.6373 | 96.4994 | 98.8024 | 86.4580 | 827 | 30 | 825 | 10 | 2 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e1 | * | 96.7557 | 95.4802 | 98.0658 | 89.8148 | 507 | 24 | 507 | 10 | 2 | 20.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 63.0031 | 47.3585 | 94.0828 | 47.0219 | 251 | 279 | 159 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.3774 | 59.2593 | 61.5385 | 97.8369 | 16 | 11 | 16 | 10 | 1 | 10.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m1_e0 | * | 98.7628 | 98.2823 | 99.2481 | 82.0270 | 1316 | 23 | 1320 | 10 | 4 | 40.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.7520 | 98.2456 | 99.2636 | 83.3619 | 1344 | 24 | 1348 | 10 | 4 | 40.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.7398 | 98.2079 | 99.2775 | 83.4529 | 1370 | 25 | 1374 | 10 | 4 | 40.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 92.8361 | 88.2463 | 97.9296 | 62.5291 | 473 | 63 | 473 | 10 | 9 | 90.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.5883 | 90.0626 | 99.5930 | 87.0976 | 2447 | 270 | 2447 | 10 | 4 | 40.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.8622 | 85.4308 | 99.3408 | 88.0041 | 1507 | 257 | 1507 | 10 | 4 | 40.0000 | |
| hfeng-pmm1 | SNP | * | map_l250_m0_e0 | homalt | 98.8924 | 99.3641 | 98.4252 | 92.6624 | 625 | 4 | 625 | 10 | 5 | 50.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.4463 | 97.0858 | 99.8455 | 77.6924 | 6463 | 194 | 6463 | 10 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.6632 | 95.6583 | 99.7539 | 76.8156 | 4054 | 184 | 4054 | 10 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | map_l150_m0_e0 | homalt | 99.5118 | 99.7741 | 99.2509 | 78.2644 | 1325 | 3 | 1325 | 10 | 3 | 30.0000 | |
| hfeng-pmm2 | INDEL | * | map_l100_m0_e0 | homalt | 98.6328 | 99.2141 | 98.0583 | 83.0759 | 505 | 4 | 505 | 10 | 5 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l100_m0_e0 | het | 98.7377 | 99.1540 | 98.3250 | 82.6403 | 586 | 5 | 587 | 10 | 1 | 10.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m1_e0 | het | 98.4563 | 98.9627 | 97.9550 | 86.5733 | 477 | 5 | 479 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e0 | het | 98.5517 | 99.0272 | 98.0806 | 87.1263 | 509 | 5 | 511 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l150_m2_e1 | het | 98.4769 | 98.8506 | 98.1061 | 87.1814 | 516 | 6 | 518 | 10 | 2 | 20.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8825 | 98.5366 | 95.2830 | 90.2349 | 202 | 3 | 202 | 10 | 7 | 70.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.8936 | 93.4498 | 98.4686 | 80.8504 | 642 | 45 | 643 | 10 | 6 | 60.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.8825 | 98.5366 | 95.2830 | 90.2349 | 202 | 3 | 202 | 10 | 7 | 70.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.8310 | 97.1731 | 96.4912 | 69.5187 | 275 | 8 | 275 | 10 | 10 | 100.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6000 | 96.8254 | 98.3871 | 66.3227 | 610 | 20 | 610 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.5959 | 95.4653 | 99.8237 | 48.8181 | 5663 | 269 | 5663 | 10 | 8 | 80.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m1_e0 | * | 98.9903 | 98.7304 | 99.2515 | 81.3277 | 1322 | 17 | 1326 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.9747 | 98.6842 | 99.2669 | 82.6860 | 1350 | 18 | 1354 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m2_e1 | * | 98.9946 | 98.7097 | 99.2811 | 82.7868 | 1377 | 18 | 1381 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | SNP | * | HG002compoundhet | homalt | 99.8980 | 99.8887 | 99.9072 | 34.7339 | 10770 | 12 | 10770 | 10 | 10 | 100.0000 | |
| hfeng-pmm3 | SNP | * | map_l250_m0_e0 | homalt | 98.8124 | 99.2051 | 98.4227 | 92.6442 | 624 | 5 | 624 | 10 | 5 | 50.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.3762 | 97.2826 | 99.4947 | 68.4722 | 1969 | 55 | 1969 | 10 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6122 | 99.3198 | 99.9063 | 37.9962 | 10659 | 73 | 10659 | 10 | 4 | 40.0000 | |
| hfeng-pmm3 | SNP | tv | HG002complexvar | homalt | 99.9769 | 99.9643 | 99.9895 | 22.8756 | 95077 | 34 | 95069 | 10 | 9 | 90.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.1684 | 91.4205 | 99.2366 | 87.1594 | 1300 | 122 | 1300 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.8613 | 87.6232 | 98.7654 | 88.2880 | 800 | 113 | 800 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.1373 | 96.5750 | 99.7509 | 81.8576 | 4004 | 142 | 4004 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.2324 | 94.9716 | 99.6035 | 82.0153 | 2512 | 133 | 2512 | 10 | 3 | 30.0000 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | homalt | 99.4741 | 99.6988 | 99.2504 | 78.1634 | 1324 | 4 | 1324 | 10 | 3 | 30.0000 | |
| jlack-gatk | INDEL | * | map_l125_m2_e1 | homalt | 98.7734 | 98.8372 | 98.7097 | 86.3987 | 765 | 9 | 765 | 10 | 5 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3101 | 98.8739 | 97.7528 | 75.8415 | 439 | 5 | 435 | 10 | 3 | 30.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.3542 | 95.3608 | 97.3684 | 75.3407 | 370 | 18 | 370 | 10 | 7 | 70.0000 | |
| jlack-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 94.9037 | 90.3820 | 99.9017 | 57.2515 | 10102 | 1075 | 10162 | 10 | 9 | 90.0000 | |