PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61351-61400 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.4211 | 99.0527 | 99.7923 | 61.9326 | 4810 | 46 | 4804 | 10 | 2 | 20.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4045 | 98.9789 | 99.8338 | 50.4652 | 6010 | 62 | 6006 | 10 | 5 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4778 | 99.2346 | 99.7223 | 46.3498 | 3630 | 28 | 3591 | 10 | 1 | 10.0000 | |
| ltrigg-rtg2 | INDEL | * | map_siren | homalt | 98.9758 | 98.3427 | 99.6172 | 74.6678 | 2611 | 44 | 2602 | 10 | 7 | 70.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | * | * | 98.7212 | 100.0000 | 97.4747 | 93.7931 | 7 | 0 | 386 | 10 | 3 | 30.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 55.4033 | 40.0000 | 90.0990 | 78.7815 | 92 | 138 | 91 | 10 | 9 | 90.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.8841 | 77.2727 | 96.6555 | 54.2113 | 289 | 85 | 289 | 10 | 9 | 90.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.2429 | 94.0621 | 98.5272 | 72.0921 | 697 | 44 | 669 | 10 | 8 | 80.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 97.9839 | 97.9839 | 97.9839 | 87.4399 | 486 | 10 | 486 | 10 | 3 | 30.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.8006 | 90.6323 | 99.3707 | 28.9674 | 1548 | 160 | 1579 | 10 | 9 | 90.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.4337 | 89.0390 | 98.2847 | 83.6374 | 593 | 73 | 573 | 10 | 2 | 20.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 94.7936 | 91.4119 | 98.4351 | 78.0939 | 628 | 59 | 629 | 10 | 5 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.4337 | 89.0390 | 98.2847 | 83.6374 | 593 | 73 | 573 | 10 | 2 | 20.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.9768 | 87.2358 | 99.5265 | 30.0431 | 2064 | 302 | 2102 | 10 | 10 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | segdup | * | 95.0392 | 95.2880 | 94.7917 | 95.0541 | 182 | 9 | 182 | 10 | 4 | 40.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002complexvar | * | 98.2253 | 97.2498 | 99.2206 | 67.1110 | 1273 | 36 | 1273 | 10 | 9 | 90.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.9225 | 92.5121 | 97.4619 | 73.8553 | 383 | 31 | 384 | 10 | 8 | 80.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4634 | 89.3657 | 97.9550 | 62.9826 | 479 | 57 | 479 | 10 | 9 | 90.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4582 | 99.2565 | 99.6607 | 48.9520 | 2937 | 22 | 2937 | 10 | 1 | 10.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2061 | 98.9623 | 99.4512 | 52.1534 | 1812 | 19 | 1812 | 10 | 1 | 10.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.9760 | 98.3446 | 99.6155 | 65.8661 | 2614 | 44 | 2591 | 10 | 8 | 80.0000 | |
| cchapple-custom | INDEL | I6_15 | map_siren | * | 96.0396 | 95.4098 | 96.6777 | 83.6945 | 291 | 14 | 291 | 10 | 4 | 40.0000 | |
| cchapple-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8562 | 99.7624 | 99.9502 | 47.5635 | 20151 | 48 | 20069 | 10 | 7 | 70.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.7350 | 92.2280 | 97.3822 | 89.6054 | 356 | 30 | 372 | 10 | 1 | 10.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.6110 | 90.9420 | 96.4413 | 90.6799 | 251 | 25 | 271 | 10 | 1 | 10.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8854 | 99.8625 | 99.9082 | 58.4392 | 10896 | 15 | 10886 | 10 | 6 | 60.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 0.0000 | 0.0000 | 28.5714 | 95.2862 | 0 | 0 | 4 | 10 | 6 | 60.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.3396 | 98.0392 | 90.9091 | 62.3288 | 100 | 2 | 100 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7545 | 99.7818 | 99.7273 | 51.7500 | 3658 | 8 | 3657 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | het | 94.2847 | 97.2973 | 91.4530 | 95.8788 | 108 | 3 | 107 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | het | 94.7466 | 97.5207 | 92.1260 | 96.0730 | 118 | 3 | 117 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | het | 94.7887 | 97.5410 | 92.1875 | 96.1481 | 119 | 3 | 118 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.1933 | 87.6162 | 99.5285 | 30.2073 | 2073 | 293 | 2111 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.4619 | 100.0000 | 95.0495 | 45.1087 | 192 | 0 | 192 | 10 | 9 | 90.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 95.8932 | 93.9638 | 97.9036 | 75.4630 | 467 | 30 | 467 | 10 | 10 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 87.9121 | 97.5610 | 80.0000 | 87.0130 | 40 | 1 | 40 | 10 | 9 | 90.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8998 | 98.4501 | 99.3536 | 73.4648 | 1588 | 25 | 1537 | 10 | 8 | 80.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | het | 94.5170 | 94.2708 | 94.7644 | 90.7191 | 181 | 11 | 181 | 10 | 1 | 10.0000 | |
| ckim-dragen | SNP | * | * | hetalt | 99.3162 | 99.7704 | 98.8662 | 49.3103 | 869 | 2 | 872 | 10 | 9 | 90.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.0388 | 96.6321 | 97.4490 | 90.6108 | 373 | 13 | 382 | 10 | 2 | 20.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8403 | 99.9262 | 99.7545 | 48.2662 | 4062 | 3 | 4063 | 10 | 2 | 20.0000 | |
| ckim-dragen | SNP | ti | map_l250_m2_e0 | homalt | 99.1399 | 98.8565 | 99.4250 | 83.6036 | 1729 | 20 | 1729 | 10 | 9 | 90.0000 | |
| ckim-dragen | SNP | ti | map_l250_m2_e1 | homalt | 99.1226 | 98.8149 | 99.4321 | 83.6687 | 1751 | 21 | 1751 | 10 | 9 | 90.0000 | |
| ckim-dragen | SNP | tv | * | hetalt | 99.3162 | 99.7704 | 98.8662 | 49.3103 | 869 | 2 | 872 | 10 | 9 | 90.0000 | |
| ckim-dragen | SNP | tv | HG002complexvar | homalt | 99.9600 | 99.9306 | 99.9895 | 22.9484 | 95045 | 66 | 95148 | 10 | 10 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3959 | 99.1682 | 99.6246 | 82.9296 | 2623 | 22 | 2654 | 10 | 6 | 60.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9175 | 99.9267 | 99.9084 | 60.9850 | 10903 | 8 | 10906 | 10 | 2 | 20.0000 | |
| ckim-gatk | INDEL | * | map_l100_m1_e0 | homalt | 99.1850 | 99.1850 | 99.1850 | 84.2531 | 1217 | 10 | 1217 | 10 | 6 | 60.0000 | |
| ckim-gatk | INDEL | * | segdup | homalt | 99.3776 | 99.7917 | 98.9669 | 93.6950 | 958 | 2 | 958 | 10 | 9 | 90.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9275 | 98.4375 | 97.4227 | 86.2069 | 378 | 6 | 378 | 10 | 2 | 20.0000 | |