PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61201-61250 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | het | 83.0777 | 72.2504 | 97.7221 | 87.1675 | 427 | 164 | 429 | 10 | 3 | 30.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 68.7192 | 73.8095 | 64.2857 | 97.6068 | 31 | 11 | 18 | 10 | 2 | 20.0000 | |
| ckim-isaac | INDEL | D6_15 | map_siren | het | 69.0327 | 54.6429 | 93.7107 | 81.3380 | 153 | 127 | 149 | 10 | 8 | 80.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 73.7864 | 82.6087 | 66.6667 | 70.8738 | 19 | 4 | 20 | 10 | 8 | 80.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 72.0000 | 81.8182 | 64.2857 | 67.4419 | 18 | 4 | 18 | 10 | 8 | 80.0000 | |
| ckim-isaac | INDEL | I1_5 | segdup | het | 97.7612 | 97.3978 | 98.1273 | 94.4800 | 524 | 14 | 524 | 10 | 6 | 60.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 87.1050 | 83.6066 | 90.9091 | 64.1694 | 102 | 20 | 100 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.1278 | 98.7805 | 91.7355 | 88.1139 | 162 | 2 | 111 | 10 | 8 | 80.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | map_siren | het | 92.4513 | 97.4359 | 87.9518 | 96.3127 | 76 | 2 | 73 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.9511 | 97.2441 | 98.6684 | 67.2767 | 741 | 21 | 741 | 10 | 7 | 70.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9116 | 99.9214 | 99.9018 | 54.3272 | 10170 | 8 | 10170 | 10 | 10 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | segdup | * | 99.1399 | 99.1840 | 99.0958 | 96.1257 | 1094 | 9 | 1096 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_siren | het | 96.9741 | 97.5000 | 96.4539 | 89.3222 | 273 | 7 | 272 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 87.2444 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.6645 | 92.0290 | 97.4555 | 73.3740 | 381 | 33 | 383 | 10 | 10 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.6289 | 95.1389 | 96.1240 | 80.6306 | 274 | 14 | 248 | 10 | 7 | 70.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.3268 | 94.9581 | 99.8166 | 57.9977 | 5443 | 289 | 5444 | 10 | 9 | 90.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m1_e0 | het | 94.7247 | 92.9766 | 96.5398 | 94.1248 | 278 | 21 | 279 | 10 | 1 | 10.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | het | 94.7249 | 92.8803 | 96.6443 | 94.6326 | 287 | 22 | 288 | 10 | 1 | 10.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e1 | het | 94.6912 | 92.7445 | 96.7213 | 94.6529 | 294 | 23 | 295 | 10 | 1 | 10.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8325 | 99.9226 | 99.7426 | 60.4661 | 3875 | 3 | 3875 | 10 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7799 | 99.9599 | 99.6005 | 62.1560 | 2493 | 1 | 2493 | 10 | 0 | 0.0000 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3727 | 99.4055 | 99.3399 | 88.6347 | 1505 | 9 | 1505 | 10 | 9 | 90.0000 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5470 | 99.1558 | 99.9413 | 57.3410 | 17032 | 145 | 17028 | 10 | 8 | 80.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | het | 97.6557 | 95.5343 | 99.8735 | 55.0552 | 7894 | 369 | 7894 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | * | 97.8455 | 95.9038 | 99.8675 | 65.1893 | 7539 | 322 | 7538 | 10 | 4 | 40.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8349 | 99.7617 | 99.9082 | 57.3447 | 10885 | 26 | 10888 | 10 | 6 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8076 | 99.7578 | 99.8575 | 57.0019 | 7002 | 17 | 7006 | 10 | 6 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | het | 97.3350 | 95.0239 | 99.7613 | 54.4961 | 4182 | 219 | 4180 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | * | 97.6140 | 95.5678 | 99.7497 | 64.5964 | 3989 | 185 | 3986 | 10 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 87.1287 | 93.6170 | 81.4815 | 63.5135 | 44 | 3 | 44 | 10 | 8 | 80.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.2894 | 96.2963 | 96.2825 | 60.4412 | 260 | 10 | 259 | 10 | 7 | 70.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 68.4211 | 86.6667 | 56.5217 | 98.1437 | 13 | 2 | 13 | 10 | 10 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | het | 52.5060 | 52.6316 | 52.3810 | 94.1176 | 10 | 9 | 11 | 10 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 88.8889 | 97.7778 | 81.4815 | 79.3103 | 44 | 1 | 44 | 10 | 6 | 60.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_siren | het | 85.4369 | 89.7959 | 81.4815 | 84.9162 | 44 | 5 | 44 | 10 | 7 | 70.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1778 | 97.6714 | 98.6894 | 75.0164 | 755 | 18 | 753 | 10 | 4 | 40.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.0226 | 86.5506 | 98.2332 | 38.6117 | 547 | 85 | 556 | 10 | 9 | 90.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.3910 | 88.2353 | 77.2727 | 89.0547 | 45 | 6 | 34 | 10 | 2 | 20.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 94.0508 | 90.1716 | 98.2788 | 45.2919 | 578 | 63 | 571 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6457 | 99.4290 | 99.8635 | 32.0123 | 7313 | 42 | 7315 | 10 | 4 | 40.0000 | |
| ndellapenna-hhga | SNP | * | map_l100_m0_e0 | homalt | 99.6765 | 99.4406 | 99.9135 | 60.1441 | 11555 | 65 | 11555 | 10 | 8 | 80.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1773 | 98.9247 | 99.4312 | 56.1924 | 1748 | 19 | 1748 | 10 | 10 | 100.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 9.0909 | 95.4167 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 60.0000 | 0 | 0 | 0 | 10 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 41.1765 | 91.0526 | 0 | 0 | 7 | 10 | 1 | 10.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | het | 61.5385 | 100.0000 | 44.4444 | 68.4211 | 8 | 0 | 8 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.4478 | 99.5261 | 95.4545 | 52.1739 | 210 | 1 | 210 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.8621 | 75.0000 | 76.7442 | 59.4340 | 6 | 2 | 33 | 10 | 5 | 50.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.5203 | 90.3553 | 94.7917 | 56.5611 | 178 | 19 | 182 | 10 | 10 | 100.0000 | |