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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60801-60850 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.5486 | 84.8066 | 97.1246 | 70.0192 | 307 | 55 | 304 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.2163 | 78.1065 | 93.7500 | 66.1972 | 132 | 37 | 135 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.0588 | 98.9652 | 99.1525 | 77.2688 | 1052 | 11 | 1053 | 9 | 3 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D6_15 | * | homalt | 99.1477 | 98.4508 | 99.8545 | 42.0407 | 6228 | 98 | 6177 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6703 | 97.6102 | 99.7536 | 44.9684 | 3676 | 90 | 3644 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6703 | 97.6102 | 99.7536 | 44.9684 | 3676 | 90 | 3644 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1786 | 98.9124 | 99.4462 | 49.9692 | 1637 | 18 | 1616 | 9 | 2 | 22.2222 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.4497 | 95.7576 | 97.1519 | 62.7358 | 316 | 14 | 307 | 9 | 3 | 33.3333 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8466 | 94.9559 | 98.8142 | 35.1282 | 753 | 40 | 750 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.9430 | 98.1340 | 99.7654 | 46.0565 | 3734 | 71 | 3828 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.7517 | 94.7955 | 96.7273 | 71.9674 | 255 | 14 | 266 | 9 | 2 | 22.2222 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m1_e0 | het | 97.5190 | 96.2677 | 98.8032 | 75.9360 | 748 | 29 | 743 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 98.3459 | 97.0855 | 99.6394 | 45.0946 | 2465 | 74 | 2487 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.6185 | 96.2845 | 98.9899 | 65.5452 | 907 | 35 | 882 | 9 | 2 | 22.2222 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 98.2763 | 96.9365 | 99.6537 | 46.3792 | 2563 | 81 | 2590 | 9 | 8 | 88.8889 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.7655 | 97.6293 | 97.9021 | 61.5936 | 453 | 11 | 420 | 9 | 3 | 33.3333 | |
| ltrigg-rtg2 | SNP | * | * | hetalt | 99.2565 | 99.5408 | 98.9738 | 40.5020 | 867 | 4 | 868 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.9507 | 98.3108 | 99.5989 | 82.2763 | 2328 | 40 | 2235 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.0937 | 98.8111 | 99.3780 | 84.1286 | 1496 | 18 | 1438 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 84.0961 | 80.3922 | 88.1579 | 92.2449 | 82 | 20 | 67 | 9 | 2 | 22.2222 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | * | 96.9723 | 94.2398 | 99.8679 | 79.0649 | 6806 | 416 | 6806 | 9 | 4 | 44.4444 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 83.5892 | 71.9405 | 99.7391 | 27.4753 | 3433 | 1339 | 3441 | 9 | 9 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m0_e0 | * | 39.8551 | 31.2500 | 55.0000 | 90.0498 | 10 | 22 | 11 | 9 | 5 | 55.5556 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 88.3741 | 83.1461 | 94.3038 | 79.3464 | 148 | 30 | 149 | 9 | 9 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 68.4814 | 53.3724 | 95.5224 | 60.9709 | 182 | 159 | 192 | 9 | 8 | 88.8889 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 69.0769 | 53.9474 | 96.0000 | 65.2241 | 205 | 175 | 216 | 9 | 8 | 88.8889 | |
| mlin-fermikit | SNP | tv | func_cds | het | 99.1679 | 98.6827 | 99.6579 | 21.9982 | 2622 | 35 | 2622 | 9 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.3986 | 97.4766 | 99.3382 | 61.3636 | 1352 | 35 | 1351 | 9 | 1 | 11.1111 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 57.1429 | 53.8462 | 60.8696 | 96.6667 | 14 | 12 | 14 | 9 | 6 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 63.4096 | 46.8051 | 98.2726 | 36.6180 | 586 | 666 | 512 | 9 | 6 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 77.7070 | 70.1149 | 87.1429 | 99.8944 | 61 | 26 | 61 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 77.5510 | 90.4762 | 67.8571 | 99.9391 | 19 | 2 | 19 | 9 | 7 | 77.7778 | |
| ndellapenna-hhga | INDEL | * | map_l250_m1_e0 | het | 95.2632 | 95.2632 | 95.2632 | 95.6049 | 181 | 9 | 181 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | het | 95.7143 | 95.7143 | 95.7143 | 95.7282 | 201 | 9 | 201 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | * | map_l250_m2_e1 | het | 95.7346 | 95.7346 | 95.7346 | 95.8193 | 202 | 9 | 202 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | * | map_siren | hetalt | 85.8846 | 78.1377 | 95.3368 | 88.2532 | 193 | 54 | 184 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.7509 | 80.8917 | 93.5252 | 60.6232 | 127 | 30 | 130 | 9 | 4 | 44.4444 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | het | 87.3023 | 91.3043 | 83.6364 | 88.7526 | 42 | 4 | 46 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.5245 | 69.8462 | 97.8923 | 31.4607 | 454 | 196 | 418 | 9 | 8 | 88.8889 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0930 | 96.8116 | 97.3761 | 87.2063 | 334 | 11 | 334 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m1_e0 | * | 91.9424 | 91.4530 | 92.4370 | 89.1225 | 107 | 10 | 110 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e0 | * | 92.0843 | 91.2698 | 92.9134 | 89.3990 | 115 | 11 | 118 | 9 | 5 | 55.5556 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | * | 90.7237 | 86.9110 | 94.8864 | 93.3635 | 166 | 25 | 167 | 9 | 7 | 77.7778 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 87.8527 | 89.3939 | 86.3636 | 84.4706 | 59 | 7 | 57 | 9 | 4 | 44.4444 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.3928 | 87.7828 | 95.3125 | 88.4128 | 194 | 27 | 183 | 9 | 1 | 11.1111 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.6003 | 88.1579 | 93.1818 | 89.0638 | 134 | 18 | 123 | 9 | 1 | 11.1111 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 80.7395 | 74.2574 | 88.4615 | 92.0408 | 75 | 26 | 69 | 9 | 3 | 33.3333 | |
| ltrigg-rtg2 | SNP | tv | * | hetalt | 99.2565 | 99.5408 | 98.9738 | 40.5020 | 867 | 4 | 868 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | het | 96.6478 | 93.8094 | 99.6633 | 58.3385 | 2667 | 176 | 2664 | 9 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6348 | 93.9058 | 97.4286 | 67.0123 | 339 | 22 | 341 | 9 | 7 | 77.7778 | |