PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
60451-60500 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.2254 | 99.0858 | 99.3653 | 88.4800 | 1409 | 13 | 1409 | 9 | 8 | 88.8889 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7843 | 99.6517 | 99.9173 | 61.4911 | 10873 | 38 | 10869 | 9 | 5 | 55.5556 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6735 | 97.4593 | 99.9183 | 53.0977 | 11009 | 287 | 11006 | 9 | 4 | 44.4444 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0812 | 98.5037 | 97.6623 | 82.7122 | 395 | 6 | 376 | 9 | 3 | 33.3333 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m0_e0 | het | 74.6228 | 89.4737 | 64.0000 | 97.0449 | 17 | 2 | 16 | 9 | 1 | 11.1111 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.6452 | 89.2857 | 73.5294 | 97.5887 | 25 | 3 | 25 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | D16_PLUS | segdup | * | 90.1639 | 94.8276 | 85.9375 | 97.1806 | 55 | 3 | 55 | 9 | 3 | 33.3333 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 87.5997 | 84.4444 | 91.0000 | 79.0356 | 114 | 21 | 91 | 9 | 8 | 88.8889 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9214 | 99.9312 | 99.9116 | 54.3329 | 10171 | 7 | 10167 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_siren | * | 97.6267 | 97.0530 | 98.2072 | 86.4726 | 494 | 15 | 493 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | D6_15 | segdup | * | 95.2880 | 95.2880 | 95.2880 | 94.6959 | 182 | 9 | 182 | 9 | 5 | 55.5556 | |
| ckim-dragen | INDEL | I16_PLUS | HG002complexvar | * | 98.6149 | 97.9374 | 99.3018 | 67.0164 | 1282 | 27 | 1280 | 9 | 8 | 88.8889 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1853 | 99.0462 | 99.3248 | 77.9742 | 1350 | 13 | 1324 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2070 | 100.0000 | 98.4266 | 73.0316 | 564 | 0 | 563 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.5100 | 99.3604 | 99.6600 | 70.5987 | 2641 | 17 | 2638 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.9134 | 100.0000 | 86.7647 | 77.6316 | 59 | 0 | 59 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.6860 | 91.4179 | 98.1964 | 63.3358 | 490 | 46 | 490 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5894 | 97.8804 | 99.3088 | 61.8852 | 1293 | 28 | 1293 | 9 | 7 | 77.7778 | |
| ckim-dragen | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.8223 | 98.1693 | 99.4839 | 59.8527 | 1716 | 32 | 1735 | 9 | 2 | 22.2222 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3723 | 99.3395 | 99.4052 | 88.3238 | 1504 | 10 | 1504 | 9 | 9 | 100.0000 | |
| ckim-dragen | SNP | ti | * | hetalt | 99.1507 | 99.8282 | 98.4823 | 48.3899 | 581 | 1 | 584 | 9 | 9 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5178 | 99.1170 | 99.9219 | 62.2385 | 11450 | 102 | 11509 | 9 | 8 | 88.8889 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0342 | 98.7654 | 99.3045 | 87.2122 | 1280 | 16 | 1285 | 9 | 9 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5178 | 99.1170 | 99.9219 | 62.2385 | 11450 | 102 | 11509 | 9 | 8 | 88.8889 | |
| ckim-dragen | SNP | ti | map_l250_m1_e0 | homalt | 99.1261 | 98.8177 | 99.4364 | 82.0944 | 1588 | 19 | 1588 | 9 | 8 | 88.8889 | |
| cchapple-custom | INDEL | * | map_l100_m0_e0 | homalt | 97.3258 | 96.4637 | 98.2036 | 82.8248 | 491 | 18 | 492 | 9 | 5 | 55.5556 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 85.2459 | 96.6703 | 0 | 0 | 52 | 9 | 3 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 97.0000 | 0 | 0 | 36 | 9 | 3 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.3241 | 82.4561 | 84.2105 | 99.3544 | 47 | 10 | 48 | 9 | 1 | 11.1111 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.8131 | 80.9524 | 82.6923 | 99.2172 | 34 | 8 | 43 | 9 | 1 | 11.1111 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.4606 | 99.4792 | 95.5224 | 40.8824 | 191 | 1 | 192 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m0_e0 | * | 92.4677 | 93.2039 | 91.7431 | 86.9617 | 96 | 7 | 100 | 9 | 4 | 44.4444 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.7108 | 93.6893 | 95.7547 | 87.1903 | 193 | 13 | 203 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.5000 | 95.8716 | 99.1848 | 78.2549 | 418 | 18 | 1095 | 9 | 5 | 55.5556 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 95.6365 | 93.2331 | 98.1670 | 73.3875 | 124 | 9 | 482 | 9 | 6 | 66.6667 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.2858 | 94.6860 | 97.9405 | 73.0746 | 392 | 22 | 428 | 9 | 6 | 66.6667 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 72.7273 | 97.1354 | 0 | 0 | 24 | 9 | 2 | 22.2222 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 10.0000 | 97.7528 | 0 | 0 | 1 | 9 | 2 | 22.2222 | |
| ciseli-custom | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 10.0000 | 96.0784 | 0 | 0 | 1 | 9 | 2 | 22.2222 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 10.0000 | 98.2699 | 0 | 0 | 1 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 10.0000 | 98.2818 | 0 | 0 | 1 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 18.1818 | 97.1576 | 0 | 0 | 2 | 9 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 76.6355 | 71.9298 | 82.0000 | 95.5791 | 41 | 16 | 41 | 9 | 6 | 66.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 28.0702 | 17.9775 | 64.0000 | 78.6325 | 16 | 73 | 16 | 9 | 8 | 88.8889 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 85.7143 | 0 | 0 | 0 | 9 | 7 | 77.7778 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 44.9704 | 31.1475 | 80.8511 | 62.9921 | 38 | 84 | 38 | 9 | 6 | 66.6667 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.6558 | 90.5641 | 99.1346 | 40.5714 | 883 | 92 | 1031 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.6255 | 99.2410 | 98.0176 | 83.6632 | 523 | 4 | 445 | 9 | 9 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.4329 | 96.3492 | 98.5413 | 62.2630 | 607 | 23 | 608 | 9 | 8 | 88.8889 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4019 | 90.2778 | 98.9209 | 55.1854 | 260 | 28 | 825 | 9 | 7 | 77.7778 | |