PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59901-59950 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.1325 | 96.5309 | 99.7881 | 46.4918 | 3673 | 132 | 3767 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | func_cds | * | 67.7933 | 60.4651 | 77.1429 | 50.7042 | 26 | 17 | 27 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | D6_15 | func_cds | het | 79.1035 | 82.7586 | 75.7576 | 50.7463 | 24 | 5 | 25 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 36.0211 | 23.0321 | 82.6087 | 60.0000 | 79 | 264 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | * | 81.3226 | 81.2500 | 81.3953 | 92.2662 | 26 | 6 | 35 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m0_e0 | het | 81.8620 | 85.0000 | 78.9474 | 92.4453 | 17 | 3 | 30 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | * | 7.7994 | 4.2553 | 46.6667 | 93.6170 | 2 | 45 | 7 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | het | 14.1414 | 8.3333 | 46.6667 | 93.3628 | 2 | 22 | 7 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.9582 | 83.4711 | 99.9208 | 44.6727 | 808 | 160 | 10092 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4271 | 97.3897 | 99.4869 | 56.2693 | 1567 | 42 | 1551 | 8 | 4 | 50.0000 | |
| gduggal-snapfb | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 52.9412 | 0 | 0 | 0 | 8 | 3 | 37.5000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 74.1935 | 0 | 0 | 0 | 8 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 11.1111 | 75.0000 | 0 | 0 | 1 | 8 | 2 | 25.0000 | |
| gduggal-snapfb | INDEL | C6_15 | * | * | 71.8894 | 85.7143 | 61.9048 | 96.2298 | 6 | 1 | 13 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 53.1306 | 49.0909 | 57.8947 | 66.0714 | 27 | 28 | 11 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 75.3108 | 61.8076 | 96.3636 | 56.5217 | 212 | 131 | 212 | 8 | 7 | 87.5000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 88.1961 | 82.5806 | 94.6309 | 78.0882 | 128 | 27 | 141 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | * | 84.6900 | 76.4398 | 94.9367 | 90.2107 | 146 | 45 | 150 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.6603 | 88.6076 | 97.1014 | 74.9319 | 280 | 36 | 268 | 8 | 7 | 87.5000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m0_e0 | homalt | 97.1337 | 98.0769 | 96.2085 | 88.3875 | 204 | 4 | 203 | 8 | 3 | 37.5000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | * | 80.4348 | 78.7234 | 82.2222 | 94.5189 | 37 | 10 | 37 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m0_e0 | het | 86.1538 | 96.5517 | 77.7778 | 95.0549 | 28 | 1 | 28 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | SNP | * | map_l250_m1_e0 | homalt | 98.0400 | 96.4677 | 99.6644 | 87.9687 | 2376 | 87 | 2376 | 8 | 4 | 50.0000 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | homalt | 98.1474 | 96.6493 | 99.6928 | 88.8202 | 2596 | 90 | 2596 | 8 | 4 | 50.0000 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | homalt | 98.1315 | 96.6152 | 99.6963 | 88.8565 | 2626 | 92 | 2626 | 8 | 4 | 50.0000 | |
| ghariani-varprowl | SNP | tv | map_l150_m0_e0 | homalt | 97.5460 | 95.7831 | 99.3750 | 80.3319 | 1272 | 56 | 1272 | 8 | 2 | 25.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7102 | 99.4704 | 99.9511 | 57.5377 | 16342 | 87 | 16340 | 8 | 1 | 12.5000 | |
| gduggal-snapplat | SNP | * | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | * | tech_badpromoters | * | 91.8033 | 89.1720 | 94.5946 | 70.5179 | 140 | 17 | 140 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | * | tech_badpromoters | het | 91.0256 | 92.2078 | 89.8734 | 77.4286 | 71 | 6 | 71 | 8 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m0_e0 | homalt | 91.7078 | 84.8363 | 99.7904 | 71.0087 | 3810 | 681 | 3809 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 86.1165 | 76.7619 | 98.0676 | 77.3770 | 403 | 122 | 406 | 8 | 2 | 25.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m1_e0 | hetalt | 84.7059 | 87.8049 | 81.8182 | 83.2700 | 36 | 5 | 36 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e0 | hetalt | 85.0575 | 88.0952 | 82.2222 | 85.0993 | 37 | 5 | 37 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m2_e1 | hetalt | 85.3933 | 88.3721 | 82.6087 | 84.8684 | 38 | 5 | 38 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 2.1108 | 1.1142 | 20.0000 | 87.1795 | 4 | 355 | 2 | 8 | 1 | 12.5000 | |
| gduggal-snapvard | INDEL | * | map_l150_m1_e0 | homalt | 92.4102 | 87.0130 | 98.5213 | 84.2778 | 402 | 60 | 533 | 8 | 6 | 75.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e0 | homalt | 92.6163 | 87.3181 | 98.5989 | 84.8461 | 420 | 61 | 563 | 8 | 6 | 75.0000 | |
| gduggal-snapvard | INDEL | * | map_l150_m2_e1 | homalt | 92.4410 | 86.9919 | 98.6183 | 84.9532 | 428 | 64 | 571 | 8 | 6 | 75.0000 | |
| gduggal-snapvard | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 57.8947 | 87.4172 | 0 | 0 | 11 | 8 | 5 | 62.5000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 27.2727 | 99.8437 | 0 | 0 | 3 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 27.2727 | 99.8229 | 0 | 0 | 3 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 20.0000 | 98.5229 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 11.1111 | 98.4456 | 0 | 0 | 1 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 11.1111 | 93.3333 | 0 | 0 | 1 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | segdup | * | 14.0845 | 8.6207 | 38.4615 | 94.9807 | 5 | 53 | 5 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | segdup | het | 20.0000 | 13.5135 | 38.4615 | 94.7581 | 5 | 32 | 5 | 8 | 4 | 50.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 54.9992 | 39.3519 | 91.3043 | 52.3316 | 85 | 131 | 84 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | * | 95.5056 | 100.0000 | 91.3978 | 56.9444 | 85 | 0 | 85 | 8 | 0 | 0.0000 | |