PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59851-59900 / 86044 show all | |||||||||||||||
| jli-custom | SNP | ti | map_l125_m2_e0 | homalt | 99.7530 | 99.5774 | 99.9293 | 65.1271 | 11310 | 48 | 11310 | 8 | 8 | 100.0000 | |
| jli-custom | SNP | ti | map_l125_m2_e1 | homalt | 99.7552 | 99.5811 | 99.9299 | 65.1529 | 11410 | 48 | 11410 | 8 | 8 | 100.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9924 | 98.9924 | 98.9924 | 89.0195 | 786 | 8 | 786 | 8 | 4 | 50.0000 | |
| jli-custom | SNP | tv | map_l250_m0_e0 | het | 96.2433 | 94.0559 | 98.5348 | 89.4472 | 538 | 34 | 538 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5824 | 99.4333 | 99.7320 | 76.7777 | 2983 | 17 | 2977 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.0371 | 92.9707 | 99.3127 | 30.7967 | 1111 | 84 | 1156 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | HG002compoundhet | hetalt | 96.2053 | 93.0498 | 99.5822 | 25.8327 | 1794 | 134 | 1907 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4536 | 99.7807 | 99.1285 | 70.2141 | 910 | 2 | 910 | 8 | 5 | 62.5000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.6701 | 88.9527 | 98.9160 | 37.4576 | 620 | 77 | 730 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.9241 | 87.1570 | 99.5086 | 30.3082 | 1588 | 234 | 1620 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9361 | 99.9509 | 99.9214 | 54.3780 | 10173 | 5 | 10173 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m1_e0 | * | 96.0938 | 95.3488 | 96.8504 | 89.2962 | 246 | 12 | 246 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | * | 95.9847 | 95.0758 | 96.9112 | 89.8431 | 251 | 13 | 251 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | * | 95.9559 | 94.9091 | 97.0260 | 89.6974 | 261 | 14 | 261 | 8 | 3 | 37.5000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.8750 | 95.8763 | 97.8947 | 75.5627 | 372 | 16 | 372 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3451 | 96.0317 | 98.6949 | 65.7350 | 605 | 25 | 605 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2044 | 98.8843 | 99.5266 | 75.4930 | 1684 | 19 | 1682 | 8 | 1 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 93.4579 | 94.3396 | 92.5926 | 97.3607 | 100 | 6 | 100 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 93.8596 | 94.6903 | 93.0435 | 97.5835 | 107 | 6 | 107 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 93.9130 | 94.7368 | 93.1034 | 97.6346 | 108 | 6 | 108 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.3238 | 98.3607 | 98.2869 | 82.7101 | 480 | 8 | 459 | 8 | 2 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_siren | het | 93.6620 | 93.0070 | 94.3262 | 88.6473 | 133 | 10 | 133 | 8 | 1 | 12.5000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8583 | 99.9226 | 99.7940 | 60.8923 | 3875 | 3 | 3875 | 8 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7998 | 99.9198 | 99.6800 | 62.5636 | 2492 | 2 | 2492 | 8 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2387 | 99.0092 | 99.4691 | 88.8279 | 1499 | 15 | 1499 | 8 | 7 | 87.5000 | |
| jmaeng-gatk | SNP | * | map_l100_m1_e0 | homalt | 83.8037 | 72.1438 | 99.9590 | 65.3578 | 19481 | 7522 | 19481 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e0 | homalt | 84.8820 | 73.7670 | 99.9408 | 66.4315 | 13506 | 4803 | 13506 | 8 | 7 | 87.5000 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e1 | homalt | 84.9915 | 73.9321 | 99.9415 | 66.3568 | 13673 | 4821 | 13673 | 8 | 7 | 87.5000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m1_e0 | het | 95.1397 | 91.5789 | 98.9886 | 81.0946 | 783 | 72 | 783 | 8 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e0 | het | 95.3640 | 91.9426 | 99.0499 | 82.6284 | 833 | 73 | 834 | 8 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m2_e1 | het | 95.3994 | 91.9913 | 99.0698 | 82.6578 | 850 | 74 | 852 | 8 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | * | * | 98.9362 | 100.0000 | 97.8947 | 93.9625 | 7 | 0 | 372 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002compoundhet | het | 94.1181 | 90.6173 | 97.9003 | 50.1961 | 367 | 38 | 373 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.8712 | 78.6982 | 94.4828 | 72.7955 | 133 | 36 | 137 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.6839 | 99.4064 | 99.9631 | 71.3354 | 21769 | 130 | 21655 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4112 | 98.9838 | 99.8424 | 34.1207 | 5065 | 52 | 5068 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.3987 | 98.9438 | 99.8577 | 44.3311 | 5621 | 60 | 5614 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e1 | * | 97.7413 | 95.9773 | 99.5713 | 78.2897 | 1861 | 78 | 1858 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e1 | * | 97.4484 | 95.6785 | 99.2851 | 80.9823 | 1107 | 50 | 1111 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9514 | 95.3488 | 98.6087 | 46.3119 | 574 | 28 | 567 | 8 | 6 | 75.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9025 | 98.1098 | 99.7081 | 39.8904 | 2751 | 53 | 2733 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.0126 | 98.2938 | 99.7419 | 42.5046 | 3111 | 54 | 3091 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4970 | 92.3077 | 98.9145 | 36.5749 | 732 | 61 | 729 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | * | hetalt | 85.7294 | 75.3098 | 99.4953 | 51.3953 | 1580 | 518 | 1577 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.4155 | 93.4426 | 93.3884 | 74.3100 | 114 | 8 | 113 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 87.4862 | 79.2271 | 97.6676 | 67.3333 | 328 | 86 | 335 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9129 | 98.0590 | 99.7817 | 66.6211 | 3688 | 73 | 3657 | 8 | 5 | 62.5000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.7725 | 95.8037 | 99.8239 | 42.4645 | 4452 | 195 | 4535 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.4102 | 96.9993 | 99.8628 | 49.7674 | 5754 | 178 | 5824 | 8 | 6 | 75.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9129 | 98.0590 | 99.7817 | 66.6211 | 3688 | 73 | 3657 | 8 | 5 | 62.5000 | |