PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59801-59850 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | het | 93.6170 | 91.6667 | 95.6522 | 91.4019 | 176 | 16 | 176 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e0 | * | 90.4977 | 88.4956 | 92.5926 | 96.4167 | 100 | 13 | 100 | 8 | 4 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | * | 90.5830 | 88.5965 | 92.6606 | 96.5053 | 101 | 13 | 101 | 8 | 4 | 50.0000 | |
| jpowers-varprowl | SNP | ti | map_l125_m0_e0 | homalt | 98.7168 | 97.6397 | 99.8179 | 72.4456 | 4385 | 106 | 4385 | 8 | 6 | 75.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 84.4800 | 88.8889 | 80.4878 | 90.5747 | 32 | 4 | 33 | 8 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | map_l150_m0_e0 | homalt | 97.6637 | 96.0090 | 99.3765 | 82.5845 | 1275 | 53 | 1275 | 8 | 2 | 25.0000 | |
| jli-custom | INDEL | D16_PLUS | HG002compoundhet | hetalt | 97.5241 | 95.5394 | 99.5931 | 24.6166 | 1842 | 86 | 1958 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 95.7582 | 92.5128 | 99.2395 | 38.0448 | 902 | 73 | 1044 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.9368 | 91.2482 | 98.9362 | 35.6164 | 636 | 61 | 744 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.1481 | 97.3753 | 98.9333 | 63.7506 | 742 | 20 | 742 | 8 | 4 | 50.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.3199 | 80.0000 | 91.3978 | 73.4286 | 108 | 27 | 85 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9411 | 99.9607 | 99.9214 | 54.0979 | 10174 | 4 | 10174 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | het | 97.8292 | 97.9710 | 97.6879 | 87.4501 | 338 | 7 | 338 | 8 | 1 | 12.5000 | |
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | * | 97.5862 | 97.9239 | 97.2509 | 90.5458 | 283 | 6 | 283 | 8 | 1 | 12.5000 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | * | 95.8482 | 92.5898 | 99.3443 | 64.3692 | 1212 | 97 | 1212 | 8 | 4 | 50.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.1243 | 90.5963 | 97.9381 | 81.4176 | 395 | 41 | 380 | 8 | 3 | 37.5000 | |
| jli-custom | INDEL | I6_15 | * | hetalt | 97.1523 | 94.5503 | 99.9016 | 36.5262 | 8085 | 466 | 8123 | 8 | 8 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 85.7143 | 100.0000 | 75.0000 | 75.9398 | 24 | 0 | 24 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.5127 | 95.9108 | 97.1223 | 74.2593 | 258 | 11 | 270 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m1_e0 | * | 97.9147 | 96.4899 | 99.3822 | 78.5098 | 1292 | 47 | 1287 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l125_m2_e1 | * | 97.4288 | 95.8621 | 99.0476 | 82.9442 | 834 | 36 | 832 | 8 | 1 | 12.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002complexvar | homalt | 98.9952 | 98.6820 | 99.3103 | 43.9072 | 1198 | 16 | 1152 | 8 | 5 | 62.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6531 | 93.7323 | 99.7618 | 50.5158 | 3305 | 221 | 3350 | 8 | 7 | 87.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.2267 | 97.4545 | 99.0111 | 63.3439 | 804 | 21 | 801 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.3413 | 95.6476 | 99.0960 | 66.2729 | 901 | 41 | 877 | 8 | 1 | 12.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6531 | 93.7323 | 99.7618 | 50.5158 | 3305 | 221 | 3350 | 8 | 7 | 87.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.2267 | 97.4545 | 99.0111 | 63.3439 | 804 | 21 | 801 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.8794 | 97.6293 | 98.1308 | 62.4890 | 453 | 11 | 420 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8441 | 99.8073 | 99.8810 | 33.7603 | 6732 | 13 | 6714 | 8 | 1 | 12.5000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m0_e0 | * | 95.7430 | 92.1780 | 99.5949 | 87.5418 | 1968 | 167 | 1967 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | SNP | ti | HG002compoundhet | homalt | 98.7135 | 97.5656 | 99.8888 | 29.2249 | 7214 | 180 | 7187 | 8 | 7 | 87.5000 | |
| ltrigg-rtg1 | SNP | ti | map_l150_m0_e0 | homalt | 99.5282 | 99.3481 | 99.7091 | 74.5205 | 2743 | 18 | 2742 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e1 | het | 96.8015 | 94.0285 | 99.7430 | 81.3425 | 3102 | 197 | 3105 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.7967 | 99.6732 | 99.9204 | 57.8106 | 10064 | 33 | 10047 | 8 | 2 | 25.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | * | 97.5357 | 95.4545 | 99.7097 | 82.4960 | 2751 | 131 | 2748 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | * | 97.5651 | 95.5075 | 99.7133 | 82.6147 | 2785 | 131 | 2782 | 8 | 3 | 37.5000 | |
| ltrigg-rtg1 | SNP | tv | map_siren | homalt | 99.8926 | 99.8318 | 99.9535 | 54.5447 | 17211 | 29 | 17205 | 8 | 5 | 62.5000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.5068 | 76.3231 | 97.2028 | 39.0192 | 274 | 85 | 278 | 8 | 8 | 100.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0826 | 98.7342 | 99.4334 | 88.6605 | 1404 | 18 | 1404 | 8 | 7 | 87.5000 | |
| jmaeng-gatk | SNP | tv | segdup | homalt | 99.4735 | 99.1970 | 99.7516 | 89.7966 | 3212 | 26 | 3212 | 8 | 8 | 100.0000 | |
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | homalt | 95.3441 | 92.5344 | 98.3299 | 81.7524 | 471 | 38 | 471 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e0 | homalt | 96.0216 | 93.3159 | 98.8889 | 83.3218 | 712 | 51 | 712 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | homalt | 95.9415 | 93.1525 | 98.9026 | 83.4356 | 721 | 53 | 721 | 8 | 5 | 62.5000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8378 | 99.7231 | 99.9528 | 67.2930 | 16928 | 47 | 16928 | 8 | 6 | 75.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8378 | 99.7231 | 99.9528 | 67.2930 | 16928 | 47 | 16928 | 8 | 6 | 75.0000 | |
| jli-custom | SNP | ti | HG002compoundhet | homalt | 99.9121 | 99.9324 | 99.8918 | 30.7138 | 7389 | 5 | 7389 | 8 | 8 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7542 | 99.8360 | 99.6725 | 49.7429 | 2435 | 4 | 2435 | 8 | 0 | 0.0000 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6207 | 99.7468 | 99.4949 | 51.0355 | 1576 | 4 | 1576 | 8 | 0 | 0.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8465 | 99.8976 | 99.7954 | 28.9038 | 3902 | 4 | 3903 | 8 | 1 | 12.5000 | |
| jli-custom | SNP | ti | map_l125_m1_e0 | homalt | 99.7551 | 99.5835 | 99.9273 | 62.3216 | 10999 | 46 | 10999 | 8 | 8 | 100.0000 | |