PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59251-59300 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | * | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7661 | 99.8597 | 99.6727 | 76.2860 | 2135 | 3 | 2132 | 7 | 1 | 14.2857 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7395 | 97.7629 | 99.7358 | 42.4788 | 2622 | 60 | 2643 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7677 | 99.8606 | 99.6750 | 47.8198 | 2149 | 3 | 2147 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | homalt | 98.3678 | 98.1707 | 98.5656 | 89.0998 | 483 | 9 | 481 | 7 | 5 | 71.4286 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.0531 | 89.5265 | 99.0617 | 37.9884 | 624 | 73 | 739 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3295 | 95.4449 | 99.2901 | 33.1072 | 901 | 43 | 979 | 7 | 7 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.0808 | 82.0000 | 97.5000 | 46.5649 | 41 | 9 | 273 | 7 | 5 | 71.4286 | |
| cchapple-custom | INDEL | * | segdup | homalt | 99.5843 | 99.8958 | 99.2746 | 93.0445 | 959 | 1 | 958 | 7 | 7 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 56.2500 | 94.0520 | 0 | 0 | 9 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 50.0000 | 96.5347 | 0 | 0 | 7 | 7 | 4 | 57.1429 | |
| cchapple-custom | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 41.6667 | 96.1783 | 0 | 0 | 5 | 7 | 4 | 57.1429 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.7635 | 97.0721 | 98.4649 | 72.6946 | 431 | 13 | 449 | 7 | 7 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.9238 | 72.7273 | 86.2745 | 96.2583 | 32 | 12 | 44 | 7 | 3 | 42.8571 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3136 | 99.0921 | 99.5361 | 73.0198 | 1528 | 14 | 1502 | 7 | 5 | 71.4286 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.2544 | 100.0000 | 96.5686 | 43.8017 | 197 | 0 | 197 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 93.7322 | 93.1624 | 94.3089 | 88.0234 | 109 | 8 | 116 | 7 | 3 | 42.8571 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 94.1710 | 93.6508 | 94.6970 | 88.3082 | 118 | 8 | 125 | 7 | 3 | 42.8571 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.2112 | 100.0000 | 94.5736 | 84.5324 | 122 | 0 | 122 | 7 | 7 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.3377 | 96.0417 | 98.6692 | 81.4984 | 461 | 19 | 519 | 7 | 5 | 71.4286 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 22.2222 | 96.8085 | 0 | 1 | 2 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 12.5000 | 97.7208 | 0 | 0 | 1 | 7 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 12.5000 | 97.7337 | 0 | 0 | 1 | 7 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 72.0000 | 100.0000 | 56.2500 | 97.9408 | 1 | 0 | 9 | 7 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | * | 70.0000 | 73.6842 | 66.6667 | 41.6667 | 14 | 5 | 14 | 7 | 3 | 42.8571 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 51.2821 | 45.4545 | 58.8235 | 97.9858 | 10 | 12 | 10 | 7 | 2 | 28.5714 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e1 | het | 38.4615 | 35.7143 | 41.6667 | 98.0645 | 5 | 9 | 5 | 7 | 1 | 14.2857 | |
| ciseli-custom | INDEL | I16_PLUS | map_siren | homalt | 19.3548 | 14.2857 | 30.0000 | 87.1795 | 3 | 18 | 3 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | func_cds | homalt | 91.8455 | 89.9160 | 93.8596 | 19.1489 | 107 | 12 | 107 | 7 | 6 | 85.7143 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 41.0416 | 26.7677 | 87.9310 | 92.1196 | 53 | 145 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 40.5704 | 26.3682 | 87.9310 | 93.3333 | 53 | 148 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 40.1098 | 25.9804 | 87.9310 | 93.5196 | 53 | 151 | 51 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 37.0370 | 33.3333 | 41.6667 | 99.0603 | 5 | 10 | 5 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 35.8337 | 23.4568 | 75.8621 | 81.8750 | 19 | 62 | 22 | 7 | 7 | 100.0000 | |
| ckim-dragen | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.6641 | 98.6641 | 98.6641 | 63.0726 | 517 | 7 | 517 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 90.9091 | 97.5610 | 85.1064 | 89.8488 | 40 | 1 | 40 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7412 | 99.7085 | 99.7738 | 68.8882 | 3079 | 9 | 3088 | 7 | 6 | 85.7143 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.2069 | 96.1538 | 78.1250 | 95.6224 | 25 | 1 | 25 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 72.0000 | 100.0000 | 56.2500 | 91.0112 | 9 | 0 | 9 | 7 | 0 | 0.0000 | |
| ckim-dragen | SNP | tv | map_l250_m0_e0 | homalt | 97.6982 | 98.9637 | 96.4646 | 90.7993 | 191 | 2 | 191 | 7 | 5 | 71.4286 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7617 | 99.8940 | 99.6298 | 72.7247 | 1884 | 2 | 1884 | 7 | 5 | 71.4286 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7401 | 99.6720 | 99.8083 | 54.5545 | 3646 | 12 | 3645 | 7 | 2 | 28.5714 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.3583 | 95.9459 | 96.7742 | 64.4262 | 213 | 9 | 210 | 7 | 4 | 57.1429 | |
| ckim-gatk | INDEL | * | map_l125_m2_e0 | homalt | 99.1487 | 99.2136 | 99.0838 | 87.3090 | 757 | 6 | 757 | 7 | 4 | 57.1429 | |
| ckim-gatk | INDEL | * | map_l125_m2_e1 | homalt | 99.1607 | 99.2248 | 99.0968 | 87.3717 | 768 | 6 | 768 | 7 | 4 | 57.1429 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8234 | 96.2133 | 99.4883 | 36.4312 | 1245 | 49 | 1361 | 7 | 7 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2727 | 99.3932 | 99.1525 | 71.5271 | 819 | 5 | 819 | 7 | 1 | 14.2857 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8792 | 99.4987 | 98.2673 | 65.6463 | 397 | 2 | 397 | 7 | 5 | 71.4286 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 93.4271 | 93.3962 | 93.4579 | 92.5952 | 99 | 7 | 100 | 7 | 1 | 14.2857 | |