PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58951-59000 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | homalt | 98.6802 | 98.7805 | 98.5801 | 89.0274 | 486 | 6 | 486 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.3110 | 86.1669 | 99.3986 | 32.5999 | 1115 | 179 | 1157 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8323 | 77.7778 | 90.9091 | 89.6644 | 70 | 20 | 70 | 7 | 3 | 42.8571 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 84.4444 | 78.3505 | 91.5663 | 89.1503 | 76 | 21 | 76 | 7 | 3 | 42.8571 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.1087 | 92.3483 | 98.0392 | 62.9283 | 350 | 29 | 350 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 75.0000 | 92.3077 | 63.1579 | 85.2713 | 12 | 1 | 12 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5284 | 97.1014 | 97.9592 | 87.5680 | 335 | 10 | 336 | 7 | 1 | 14.2857 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0807 | 99.5893 | 98.5772 | 65.8570 | 485 | 2 | 485 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.6420 | 97.5355 | 99.7738 | 49.4362 | 3087 | 78 | 3087 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 85.7909 | 77.6699 | 95.8084 | 83.6435 | 160 | 46 | 160 | 7 | 4 | 57.1429 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 84.6154 | 95.6522 | 75.8621 | 82.5301 | 22 | 1 | 22 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 92.9134 | 96.7213 | 89.3939 | 84.5794 | 59 | 2 | 59 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.4410 | 87.8049 | 91.1392 | 77.4286 | 72 | 10 | 72 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 59.4059 | 43.6893 | 92.7835 | 59.2437 | 90 | 116 | 90 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8202 | 98.3099 | 99.3359 | 67.6190 | 1047 | 18 | 1047 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | het | 98.2852 | 97.4779 | 99.1060 | 84.2645 | 773 | 20 | 776 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.0792 | 88.1517 | 96.3731 | 68.2566 | 186 | 25 | 186 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | * | 93.6968 | 90.1639 | 97.5177 | 81.7829 | 275 | 30 | 275 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | SNP | ti | map_l250_m1_e0 | homalt | 98.8722 | 98.1954 | 99.5584 | 86.5187 | 1578 | 29 | 1578 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.4386 | 99.3404 | 99.5370 | 69.4360 | 1506 | 10 | 1505 | 7 | 2 | 28.5714 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7394 | 96.4567 | 99.0566 | 64.0330 | 735 | 27 | 735 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9509 | 99.9705 | 99.9313 | 54.2320 | 10175 | 3 | 10175 | 7 | 7 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | het | 97.6774 | 97.3913 | 97.9651 | 86.4780 | 336 | 9 | 337 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m0_e0 | het | 97.3057 | 98.0198 | 96.6019 | 89.7051 | 198 | 4 | 199 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0678 | 96.6163 | 99.5636 | 56.9165 | 1599 | 56 | 1597 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.9473 | 95.6422 | 98.2885 | 83.2788 | 417 | 19 | 402 | 7 | 4 | 57.1429 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.7925 | 100.0000 | 76.6667 | 85.4369 | 23 | 0 | 23 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 94.4884 | 91.0628 | 98.1818 | 71.3328 | 377 | 37 | 378 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 94.5736 | 100.0000 | 89.7059 | 90.0439 | 61 | 0 | 61 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.4015 | 97.3724 | 99.4527 | 70.1934 | 1297 | 35 | 1272 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0254 | 98.4733 | 99.5838 | 72.6059 | 1677 | 26 | 1675 | 7 | 2 | 28.5714 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | het | 94.4228 | 95.2830 | 93.5780 | 90.6598 | 101 | 5 | 102 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | het | 90.1639 | 91.6667 | 88.7097 | 95.3662 | 55 | 5 | 55 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e0 | het | 91.0448 | 92.4242 | 89.7059 | 95.7233 | 61 | 5 | 61 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | het | 91.0448 | 92.4242 | 89.7059 | 95.8838 | 61 | 5 | 61 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | segdup | * | 99.1492 | 98.9613 | 99.3377 | 93.8436 | 1048 | 11 | 1050 | 7 | 3 | 42.8571 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m0_e0 | het | 64.4258 | 55.5556 | 76.6667 | 93.2584 | 5 | 4 | 23 | 7 | 1 | 14.2857 | |
| qzeng-custom | SNP | * | tech_badpromoters | * | 96.8273 | 98.0892 | 95.5975 | 47.8689 | 154 | 3 | 152 | 7 | 1 | 14.2857 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.9116 | 99.2110 | 98.6139 | 86.9408 | 503 | 4 | 498 | 7 | 6 | 85.7143 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7451 | 99.7462 | 99.7441 | 40.9924 | 2751 | 7 | 2728 | 7 | 5 | 71.4286 | |
| qzeng-custom | SNP | tv | map_l250_m1_e0 | homalt | 75.0174 | 60.5140 | 98.6641 | 89.2181 | 518 | 338 | 517 | 7 | 7 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.9467 | 93.2432 | 96.7136 | 59.8113 | 207 | 15 | 206 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | * | map_l125_m1_e0 | homalt | 98.6977 | 98.3607 | 99.0371 | 84.0640 | 720 | 12 | 720 | 7 | 3 | 42.8571 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e1 | homalt | 98.5772 | 98.5772 | 98.5772 | 88.8207 | 485 | 7 | 485 | 7 | 5 | 71.4286 | |
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | * | 93.7500 | 96.1538 | 91.4634 | 99.7895 | 75 | 3 | 75 | 7 | 1 | 14.2857 | |
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | het | 91.8919 | 96.2264 | 87.9310 | 97.3827 | 51 | 2 | 51 | 7 | 1 | 14.2857 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 65.9704 | 49.6410 | 98.3092 | 51.1216 | 484 | 491 | 407 | 7 | 4 | 57.1429 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.8753 | 98.4496 | 97.3077 | 64.2857 | 254 | 4 | 253 | 7 | 4 | 57.1429 | |