PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58901-58950 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.3617 | 96.3504 | 98.3945 | 78.0353 | 396 | 15 | 429 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.6211 | 94.4615 | 98.8818 | 35.5967 | 614 | 36 | 619 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3962 | 98.9698 | 99.8262 | 37.7685 | 4035 | 42 | 4020 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | * | 97.7114 | 95.8874 | 99.6061 | 77.1094 | 1772 | 76 | 1770 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e0 | * | 97.7384 | 95.9269 | 99.6196 | 78.1861 | 1837 | 78 | 1833 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 90.3872 | 86.4865 | 94.6565 | 71.5217 | 128 | 20 | 124 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | * | 97.5076 | 96.4637 | 98.5743 | 79.6096 | 491 | 18 | 484 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002compoundhet | hetalt | 85.8044 | 75.3942 | 99.5501 | 38.3274 | 1578 | 515 | 1549 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 86.9857 | 77.8731 | 98.5138 | 67.0860 | 454 | 129 | 464 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.6311 | 77.0492 | 86.7925 | 78.4553 | 47 | 14 | 46 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6725 | 96.5079 | 98.8655 | 65.2198 | 608 | 22 | 610 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5327 | 97.1098 | 97.9592 | 67.3333 | 336 | 10 | 336 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2639 | 98.7961 | 99.7361 | 66.9655 | 2626 | 32 | 2646 | 7 | 4 | 57.1429 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8148 | 99.6933 | 99.9367 | 55.5774 | 11050 | 34 | 11048 | 7 | 4 | 57.1429 | |
| jli-custom | SNP | * | map_l150_m0_e0 | homalt | 99.5955 | 99.3641 | 99.8280 | 71.6988 | 4063 | 26 | 4063 | 7 | 7 | 100.0000 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7828 | 99.7106 | 99.8551 | 69.0939 | 4823 | 14 | 4823 | 7 | 4 | 57.1429 | |
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7984 | 99.8789 | 99.7181 | 29.8389 | 2475 | 3 | 2476 | 7 | 0 | 0.0000 | |
| jli-custom | SNP | ti | map_l250_m0_e0 | het | 96.7636 | 94.4325 | 99.2126 | 90.7809 | 882 | 52 | 882 | 7 | 5 | 71.4286 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6683 | 99.5308 | 99.8063 | 75.9886 | 3606 | 17 | 3606 | 7 | 5 | 71.4286 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.4191 | 94.1441 | 96.7290 | 64.9180 | 209 | 13 | 207 | 7 | 5 | 71.4286 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e0 | homalt | 98.8838 | 98.6894 | 99.0789 | 86.9841 | 753 | 10 | 753 | 7 | 4 | 57.1429 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e1 | homalt | 98.8997 | 98.7080 | 99.0921 | 87.0551 | 764 | 10 | 764 | 7 | 4 | 57.1429 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2580 | 95.1314 | 99.4819 | 36.3636 | 1231 | 63 | 1344 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 58.0645 | 48.6486 | 72.0000 | 74.2268 | 18 | 19 | 18 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | func_cds | * | 94.9438 | 93.8889 | 96.0227 | 35.7664 | 169 | 11 | 169 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.4695 | 96.2963 | 98.6717 | 76.3359 | 520 | 20 | 520 | 7 | 6 | 85.7143 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m1_e0 | * | 90.2913 | 87.7358 | 93.0000 | 96.0723 | 93 | 13 | 93 | 7 | 4 | 57.1429 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e0 | het | 89.3939 | 89.3939 | 89.3939 | 97.2454 | 59 | 7 | 59 | 7 | 3 | 42.8571 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | het | 89.3939 | 89.3939 | 89.3939 | 97.3419 | 59 | 7 | 59 | 7 | 3 | 42.8571 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 80.5556 | 80.5556 | 80.5556 | 64.0000 | 29 | 7 | 29 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m1_e0 | * | 62.0690 | 50.9434 | 79.4118 | 90.3683 | 27 | 26 | 27 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | * | 62.0690 | 50.9434 | 79.4118 | 91.7073 | 27 | 26 | 27 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e1 | * | 62.0690 | 50.9434 | 79.4118 | 91.9048 | 27 | 26 | 27 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | SNP | ti | func_cds | homalt | 99.9052 | 99.9431 | 99.8674 | 21.7810 | 5272 | 3 | 5272 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | * | 93.9597 | 97.2222 | 90.9091 | 63.5071 | 70 | 2 | 70 | 7 | 1 | 14.2857 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | het | 88.8889 | 96.9697 | 82.0513 | 68.2927 | 32 | 1 | 32 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.9703 | 74.2812 | 99.2529 | 37.7409 | 930 | 322 | 930 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.1229 | 95.5140 | 98.7868 | 83.6312 | 511 | 24 | 570 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.8578 | 97.1545 | 98.5714 | 57.5022 | 478 | 14 | 483 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m1_e0 | homalt | 99.0600 | 98.6960 | 99.4267 | 80.9576 | 1211 | 16 | 1214 | 7 | 4 | 57.1429 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.8925 | 88.9660 | 99.3966 | 87.1383 | 1153 | 143 | 1153 | 7 | 4 | 57.1429 | |
| raldana-dualsentieon | SNP | ti | map_l100_m0_e0 | homalt | 99.7165 | 99.5241 | 99.9096 | 57.9975 | 7737 | 37 | 7737 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | SNP | ti | map_l150_m1_e0 | homalt | 99.6923 | 99.4814 | 99.9041 | 67.2252 | 7289 | 38 | 7289 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | homalt | 99.6974 | 99.4879 | 99.9077 | 69.7016 | 7577 | 39 | 7577 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e1 | homalt | 99.6939 | 99.4800 | 99.9086 | 69.7472 | 7653 | 40 | 7653 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 96.0360 | 92.8854 | 99.4078 | 87.3434 | 1175 | 90 | 1175 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2023 | 96.7189 | 99.7319 | 41.3917 | 2594 | 88 | 2604 | 7 | 7 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | homalt | 98.9747 | 98.9071 | 99.0424 | 85.2054 | 724 | 8 | 724 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | homalt | 99.0164 | 98.9515 | 99.0814 | 86.1076 | 755 | 8 | 755 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | homalt | 99.0304 | 98.9664 | 99.0944 | 86.2407 | 766 | 8 | 766 | 7 | 6 | 85.7143 | |