PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58801-58850 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | homalt | 99.7814 | 99.7339 | 99.8289 | 76.4129 | 4123 | 11 | 4083 | 7 | 3 | 42.8571 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.8240 | 87.8505 | 98.3945 | 74.4282 | 470 | 65 | 429 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 93.0693 | 100.0000 | 87.0370 | 48.0769 | 47 | 0 | 47 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | homalt | 98.2517 | 98.9437 | 97.5694 | 89.3570 | 281 | 3 | 281 | 7 | 5 | 71.4286 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 85.1218 | 75.0000 | 98.4018 | 76.1827 | 432 | 144 | 431 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 90.8367 | 84.7594 | 97.8528 | 60.4848 | 317 | 57 | 319 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 65.5889 | 49.3171 | 97.8852 | 70.8627 | 325 | 334 | 324 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 65.5889 | 49.3171 | 97.8852 | 70.8627 | 325 | 334 | 324 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 79.8194 | 68.1004 | 96.4103 | 67.2819 | 190 | 89 | 188 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.5758 | 78.1038 | 99.6623 | 73.9048 | 2076 | 582 | 2066 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 68.7772 | 52.7619 | 98.7522 | 77.3150 | 554 | 496 | 554 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | * | 79.6064 | 66.4675 | 99.2196 | 91.7555 | 890 | 449 | 890 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | * | 79.7551 | 66.6667 | 99.2383 | 92.3930 | 912 | 456 | 912 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | * | 80.0171 | 67.0251 | 99.2569 | 92.4026 | 935 | 460 | 935 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | SNP | * | * | hetalt | 95.9084 | 92.8817 | 99.1390 | 56.6631 | 809 | 62 | 806 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.0673 | 90.9611 | 99.5617 | 70.9107 | 1590 | 158 | 1590 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 92.5771 | 86.4295 | 99.6662 | 81.9053 | 2089 | 328 | 2090 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | SNP | ti | map_siren | homalt | 87.4388 | 77.6954 | 99.9762 | 56.7476 | 29459 | 8457 | 29428 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | SNP | tv | * | hetalt | 95.9084 | 92.8817 | 99.1390 | 56.6631 | 809 | 62 | 806 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 73.9073 | 59.4883 | 97.5524 | 91.9640 | 279 | 190 | 279 | 7 | 7 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 65.0000 | 65.0000 | 65.0000 | 99.6383 | 13 | 7 | 13 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 77.4194 | 100.0000 | 63.1579 | 99.6078 | 12 | 0 | 12 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 80.6406 | 68.2128 | 98.6056 | 59.6463 | 500 | 233 | 495 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m0_e0 | * | 96.9035 | 95.2118 | 98.6564 | 78.2917 | 517 | 26 | 514 | 7 | 3 | 42.8571 | |
| ltrigg-rtg1 | INDEL | I6_15 | HG002compoundhet | hetalt | 95.0169 | 90.5822 | 99.9083 | 29.3644 | 7733 | 804 | 7628 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.5354 | 98.1623 | 98.9114 | 65.7432 | 641 | 12 | 636 | 7 | 6 | 85.7143 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.5657 | 90.8582 | 98.5887 | 60.6037 | 487 | 49 | 489 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | homalt | 99.6317 | 99.5217 | 99.7419 | 87.3537 | 2705 | 13 | 2705 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | tech_badpromoters | * | 97.5000 | 99.3631 | 95.7055 | 51.6320 | 156 | 1 | 156 | 7 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | tech_badpromoters | het | 95.6522 | 100.0000 | 91.6667 | 54.0984 | 77 | 0 | 77 | 7 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7697 | 99.7184 | 99.8211 | 26.0771 | 3895 | 11 | 3905 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m1_e0 | het | 96.5578 | 93.5647 | 99.7488 | 79.9395 | 2777 | 191 | 2780 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | ti | map_l250_m2_e0 | het | 96.8039 | 94.0074 | 99.7719 | 81.1683 | 3059 | 195 | 3062 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | tv | HG002compoundhet | homalt | 99.0027 | 98.2290 | 99.7886 | 40.4282 | 3328 | 60 | 3304 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.6449 | 97.8200 | 99.4838 | 84.0414 | 1391 | 31 | 1349 | 7 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.4424 | 97.6999 | 99.1963 | 85.4542 | 892 | 21 | 864 | 7 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8395 | 99.7434 | 99.9357 | 57.3637 | 10883 | 28 | 10887 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8004 | 99.7008 | 99.9001 | 56.9199 | 6998 | 21 | 7003 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8184 | 99.8912 | 99.7456 | 35.4899 | 2755 | 3 | 2745 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m1_e0 | homalt | 99.8561 | 99.7899 | 99.9225 | 60.9412 | 9024 | 19 | 9023 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | homalt | 99.8534 | 99.7829 | 99.9239 | 63.3991 | 9194 | 20 | 9193 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | homalt | 99.8548 | 99.7850 | 99.9246 | 63.4100 | 9282 | 20 | 9281 | 7 | 4 | 57.1429 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | het | 96.4634 | 93.5052 | 99.6150 | 78.6168 | 1814 | 126 | 1811 | 7 | 2 | 28.5714 | |
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | het | 96.5098 | 93.5878 | 99.6202 | 78.7624 | 1839 | 126 | 1836 | 7 | 2 | 28.5714 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 89.2216 | 80.9904 | 99.3151 | 34.7798 | 1014 | 238 | 1015 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m0_e0 | het | 95.8851 | 93.1857 | 98.7455 | 80.3036 | 547 | 40 | 551 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m0_e0 | * | 96.3239 | 94.1634 | 98.5859 | 85.8854 | 484 | 30 | 488 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | C1_5 | HG002complexvar | het | 91.6047 | 85.7143 | 98.3645 | 86.9869 | 6 | 1 | 421 | 7 | 2 | 28.5714 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 95.6250 | 96.0851 | 0 | 0 | 153 | 7 | 1 | 14.2857 | |
| jmaeng-gatk | SNP | tv | HG002compoundhet | homalt | 99.4223 | 99.0555 | 99.7918 | 42.9493 | 3356 | 32 | 3355 | 7 | 6 | 85.7143 | |