PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58751-58800 / 86044 show all | |||||||||||||||
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | het | 72.5049 | 63.3333 | 84.7826 | 81.8182 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | het | 72.5049 | 63.3333 | 84.7826 | 83.2117 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.9631 | 15 | 0 | 14 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | het | 83.1234 | 76.9231 | 90.4110 | 81.1370 | 60 | 18 | 66 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6834 | 98.0620 | 97.3077 | 65.4714 | 253 | 5 | 253 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4084 | 97.8691 | 98.9537 | 78.0007 | 643 | 14 | 662 | 7 | 3 | 42.8571 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 95.1686 | 91.6276 | 98.9943 | 43.0908 | 1368 | 125 | 689 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 86.4554 | 77.3846 | 97.9351 | 23.6486 | 503 | 147 | 332 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 82.4503 | 70.7523 | 98.7826 | 36.8825 | 1674 | 692 | 568 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 87.4562 | 79.3003 | 97.4820 | 62.2795 | 272 | 71 | 271 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.0939 | 89.9412 | 98.6486 | 45.1271 | 4891 | 547 | 511 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 93.2232 | 88.4116 | 98.5887 | 45.8515 | 4219 | 553 | 489 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8166 | 94.3609 | 97.3180 | 80.3612 | 251 | 15 | 254 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 79.3672 | 73.6842 | 86.0000 | 99.4308 | 42 | 15 | 43 | 7 | 4 | 57.1429 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 92.7348 | 88.8325 | 96.9957 | 40.7125 | 1050 | 132 | 226 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | segdup | * | 92.1680 | 88.4817 | 96.1749 | 92.8987 | 169 | 22 | 176 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.4651 | 56.5217 | 65.0000 | 70.1493 | 13 | 10 | 13 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 50.5495 | 37.7049 | 76.6667 | 71.4286 | 23 | 38 | 23 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | het | 96.4347 | 94.4444 | 98.5106 | 85.0794 | 459 | 27 | 463 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e0 | het | 96.4087 | 94.3662 | 98.5417 | 86.5509 | 469 | 28 | 473 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | het | 96.4880 | 94.4882 | 98.5743 | 86.6285 | 480 | 28 | 484 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 76.5104 | 69.4915 | 85.1064 | 67.3611 | 41 | 18 | 40 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 65.3479 | 50.1377 | 93.8053 | 47.9263 | 182 | 181 | 106 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l125_m0_e0 | homalt | 99.3333 | 98.7783 | 99.8945 | 72.5403 | 6630 | 82 | 6630 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.4865 | 91.4286 | 82.0513 | 92.3228 | 32 | 3 | 32 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | homalt | 96.4972 | 94.1257 | 98.9914 | 79.7491 | 689 | 43 | 687 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | homalt | 96.4345 | 93.9712 | 99.0305 | 81.0846 | 717 | 46 | 715 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | homalt | 96.3491 | 93.7984 | 99.0424 | 81.2275 | 726 | 48 | 724 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 30.0000 | 92.7007 | 0 | 0 | 3 | 7 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 46.1538 | 97.4104 | 0 | 0 | 6 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | C6_15 | map_siren | het | 0.0000 | 0.0000 | 30.0000 | 97.7925 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l125_m0_e0 | * | 68.9655 | 83.3333 | 58.8235 | 95.6962 | 10 | 2 | 10 | 7 | 2 | 28.5714 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m1_e0 | * | 74.2857 | 86.6667 | 65.0000 | 95.8932 | 13 | 2 | 13 | 7 | 2 | 28.5714 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e0 | het | 78.9474 | 93.7500 | 68.1818 | 95.6607 | 15 | 1 | 15 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 54.8776 | 37.8708 | 99.6098 | 30.9469 | 1800 | 2953 | 1787 | 7 | 7 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | * | 64.5598 | 68.4211 | 61.1111 | 50.0000 | 13 | 6 | 11 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | het | 69.5652 | 100.0000 | 53.3333 | 51.6129 | 8 | 0 | 8 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 55.0595 | 38.1013 | 99.2214 | 43.7774 | 903 | 1467 | 892 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | het | 72.5049 | 63.3333 | 84.7826 | 83.5125 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4824 | 99.4939 | 99.4709 | 56.5517 | 1376 | 7 | 1316 | 7 | 1 | 14.2857 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6996 | 99.6713 | 99.7279 | 30.4782 | 2729 | 9 | 2566 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 63.1579 | 100.0000 | 46.1538 | 96.7581 | 9 | 0 | 6 | 7 | 1 | 14.2857 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4164 | 99.4681 | 99.3648 | 53.1463 | 1122 | 6 | 1095 | 7 | 2 | 28.5714 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4124 | 99.3179 | 99.5070 | 45.2160 | 1456 | 10 | 1413 | 7 | 2 | 28.5714 | |
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | homalt | 99.8623 | 99.8226 | 99.9020 | 73.1001 | 7314 | 13 | 7136 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | homalt | 99.8676 | 99.8293 | 99.9058 | 75.1080 | 7603 | 13 | 7426 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e1 | homalt | 99.8689 | 99.8310 | 99.9067 | 75.1753 | 7680 | 13 | 7499 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.8611 | 83.3333 | 76.6667 | 90.0332 | 30 | 6 | 23 | 7 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | homalt | 99.7710 | 99.7212 | 99.8208 | 74.4574 | 3935 | 11 | 3900 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | homalt | 99.7787 | 99.7306 | 99.8269 | 76.3785 | 4072 | 11 | 4037 | 7 | 3 | 42.8571 | |