PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58401-58450 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6929 | 99.6061 | 99.7799 | 36.0694 | 2276 | 9 | 2720 | 6 | 4 | 66.6667 | |
| cchapple-custom | INDEL | D1_5 | map_siren | homalt | 98.7468 | 98.0308 | 99.4732 | 77.4812 | 1145 | 23 | 1133 | 6 | 4 | 66.6667 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2009 | 99.0050 | 99.3976 | 60.0802 | 995 | 10 | 990 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4104 | 99.5294 | 99.2916 | 44.4954 | 846 | 4 | 841 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 94.3499 | 95.3125 | 93.4066 | 88.7237 | 61 | 3 | 85 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 94.8166 | 95.7746 | 93.8776 | 89.0503 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 94.8166 | 95.7746 | 93.8776 | 89.3013 | 68 | 3 | 92 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 33.3333 | 93.8776 | 0 | 0 | 3 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | C1_5 | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 14.2857 | 97.6898 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 54.2636 | 41.6667 | 77.7778 | 88.6076 | 20 | 28 | 21 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 55.8807 | 43.1373 | 79.3103 | 88.0165 | 22 | 29 | 23 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | tech_badpromoters | het | 60.0000 | 75.0000 | 50.0000 | 33.3333 | 6 | 2 | 6 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | func_cds | * | 84.7059 | 83.7209 | 85.7143 | 51.7241 | 36 | 7 | 36 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 55.5556 | 50.0000 | 62.5000 | 96.8317 | 10 | 10 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l250_m2_e0 | het | 40.0000 | 35.7143 | 45.4545 | 98.1788 | 5 | 9 | 5 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 28.5000 | 17.5926 | 75.0000 | 88.5167 | 19 | 89 | 18 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 94.9153 | 0 | 26 | 0 | 6 | 2 | 33.3333 | ||
| ciseli-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 41.9948 | 28.0702 | 83.3333 | 91.1330 | 32 | 82 | 30 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m1_e0 | homalt | 30.4348 | 21.2121 | 53.8462 | 86.1702 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e0 | homalt | 30.4348 | 21.2121 | 53.8462 | 87.6190 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m2_e1 | homalt | 30.4348 | 21.2121 | 53.8462 | 87.8505 | 7 | 26 | 7 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 22.2222 | 50.0000 | 14.2857 | 93.8596 | 1 | 1 | 1 | 6 | 1 | 16.6667 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | * | map_l100_m2_e0 | hetalt | 72.0000 | 64.2857 | 81.8182 | 76.5957 | 27 | 15 | 27 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 71.4286 | 83.3333 | 62.5000 | 85.1852 | 10 | 2 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | map_siren | hetalt | 81.1321 | 75.4386 | 87.7551 | 63.1579 | 43 | 14 | 43 | 6 | 6 | 100.0000 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | tv | map_l100_m2_e0 | hetalt | 72.0000 | 64.2857 | 81.8182 | 76.5957 | 27 | 15 | 27 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7413 | 99.9261 | 99.5572 | 74.4050 | 1352 | 1 | 1349 | 6 | 4 | 66.6667 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.8778 | 94.5946 | 97.1963 | 63.5434 | 210 | 12 | 208 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.6628 | 98.4043 | 98.9228 | 61.2656 | 555 | 9 | 551 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 93.2492 | 92.4528 | 94.0594 | 95.6068 | 98 | 8 | 95 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 93.6762 | 92.9204 | 94.4444 | 96.0497 | 105 | 8 | 102 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 93.7328 | 92.9825 | 94.4954 | 96.1389 | 106 | 8 | 103 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 90.8495 | 89.8305 | 91.8919 | 87.8289 | 53 | 6 | 68 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 91.1243 | 90.1639 | 92.1053 | 88.7073 | 55 | 6 | 70 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 91.1744 | 90.1639 | 92.2078 | 88.8081 | 55 | 6 | 71 | 6 | 1 | 16.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8352 | 99.9180 | 99.7526 | 51.8658 | 2437 | 2 | 2419 | 6 | 1 | 16.6667 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.7466 | 99.8734 | 99.6200 | 55.6834 | 1578 | 2 | 1573 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 30.7692 | 40.0000 | 25.0000 | 99.2747 | 2 | 3 | 2 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 60.6061 | 58.8235 | 62.5000 | 99.5311 | 10 | 7 | 10 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | * | map_l250_m0_e0 | homalt | 62.2222 | 56.0000 | 70.0000 | 98.0411 | 14 | 11 | 14 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 25.0000 | 97.8261 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 14.2857 | 96.4824 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 40.0000 | 95.9016 | 0 | 0 | 4 | 6 | 1 | 16.6667 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 14.2857 | 96.4824 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 14.2857 | 95.9064 | 0 | 0 | 1 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 14.2857 | 95.3642 | 0 | 0 | 1 | 6 | 2 | 33.3333 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 70.0000 | 97.7350 | 0 | 0 | 14 | 6 | 2 | 33.3333 | |