PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58201-58250 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | map_l100_m0_e0 | * | 92.6956 | 91.2621 | 94.1748 | 88.1609 | 94 | 9 | 97 | 6 | 2 | 33.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | * | 92.6432 | 90.5983 | 94.7826 | 88.7586 | 106 | 11 | 109 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e0 | * | 93.1750 | 91.2698 | 95.1613 | 88.9581 | 115 | 11 | 118 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | D6_15 | segdup | * | 91.4691 | 86.9110 | 96.5318 | 93.2842 | 166 | 25 | 167 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | segdup | het | 94.7244 | 95.6522 | 93.8144 | 94.1033 | 88 | 4 | 91 | 6 | 6 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 89.8828 | 86.1111 | 94.0000 | 83.4437 | 93 | 15 | 94 | 6 | 2 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 85.0000 | 0 | 1 | 0 | 6 | 4 | 66.6667 | ||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.2624 | 73.7143 | 95.6522 | 64.2487 | 129 | 46 | 132 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.6821 | 98.0105 | 99.3631 | 78.4932 | 936 | 19 | 936 | 6 | 3 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m1_e0 | het | 98.4520 | 98.1481 | 98.7578 | 86.5497 | 477 | 9 | 477 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e0 | het | 98.4864 | 98.1891 | 98.7854 | 87.7084 | 488 | 9 | 488 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l125_m2_e1 | het | 98.5192 | 98.2283 | 98.8119 | 87.8019 | 499 | 9 | 499 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | * | 94.8357 | 95.2830 | 94.3925 | 96.0149 | 101 | 5 | 101 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e0 | * | 95.1542 | 95.5752 | 94.7368 | 96.3798 | 108 | 5 | 108 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m2_e1 | * | 95.1965 | 95.6140 | 94.7826 | 96.4691 | 109 | 5 | 109 | 6 | 1 | 16.6667 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.6516 | 91.0112 | 96.4497 | 70.6087 | 162 | 16 | 163 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | homalt | 95.0820 | 96.6667 | 93.5484 | 80.3383 | 87 | 3 | 87 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5782 | 99.3986 | 99.7586 | 57.7309 | 2479 | 15 | 2479 | 6 | 2 | 33.3333 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.8937 | 73.5294 | 92.4051 | 90.6509 | 75 | 27 | 73 | 6 | 4 | 66.6667 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6200 | 99.3718 | 99.8694 | 32.0414 | 4587 | 29 | 4588 | 6 | 2 | 33.3333 | |
| egarrison-hhga | SNP | * | map_l125_m0_e0 | homalt | 99.7164 | 99.5232 | 99.9103 | 68.4370 | 6680 | 32 | 6680 | 6 | 6 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6923 | 99.5392 | 99.8459 | 28.7987 | 3888 | 18 | 3888 | 6 | 1 | 16.6667 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.6616 | 98.4733 | 98.8506 | 65.3846 | 516 | 8 | 516 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4951 | 99.4232 | 99.5671 | 63.4301 | 1379 | 8 | 1380 | 6 | 2 | 33.3333 | |
| egarrison-hhga | SNP | tv | map_l100_m1_e0 | homalt | 99.8284 | 99.7235 | 99.9335 | 62.1365 | 9018 | 25 | 9018 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e0 | homalt | 99.8316 | 99.7287 | 99.9347 | 64.6441 | 9189 | 25 | 9189 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | tv | map_l100_m2_e1 | homalt | 99.8332 | 99.7312 | 99.9354 | 64.6456 | 9277 | 25 | 9277 | 6 | 5 | 83.3333 | |
| egarrison-hhga | SNP | tv | map_l250_m0_e0 | het | 97.4268 | 95.9790 | 98.9189 | 91.9902 | 549 | 23 | 549 | 6 | 2 | 33.3333 | |
| eyeh-varpipe | INDEL | * | map_l250_m1_e0 | homalt | 97.3105 | 98.1651 | 96.4706 | 95.2843 | 107 | 2 | 164 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 40.0000 | 90.1961 | 0 | 0 | 4 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 40.0000 | 93.4211 | 0 | 0 | 4 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 53.8462 | 93.6585 | 0 | 0 | 7 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 84.2105 | 96.6071 | 0 | 0 | 32 | 6 | 2 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 93.6170 | 95.2929 | 0 | 0 | 88 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e0 | homalt | 98.8577 | 98.9605 | 98.7552 | 88.0545 | 476 | 5 | 476 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | * | map_l150_m2_e1 | homalt | 98.8832 | 98.9837 | 98.7830 | 88.0630 | 487 | 5 | 487 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1495 | 99.0291 | 99.2701 | 69.1789 | 816 | 8 | 816 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.5155 | 98.1707 | 94.9153 | 85.9857 | 161 | 3 | 112 | 6 | 6 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.6667 | 92.8571 | 81.2500 | 94.6932 | 26 | 2 | 26 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.2781 | 97.3753 | 99.1979 | 63.8123 | 742 | 20 | 742 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3871 | 98.1609 | 98.6143 | 65.7437 | 427 | 8 | 427 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.8789 | 71.8519 | 92.5000 | 74.9216 | 97 | 38 | 74 | 6 | 4 | 66.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2959 | 98.6897 | 99.9096 | 50.3888 | 6628 | 88 | 6630 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8825 | 96.6527 | 99.1441 | 85.9378 | 693 | 24 | 695 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.0117 | 96.8545 | 99.1968 | 86.8347 | 739 | 24 | 741 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.9841 | 96.7866 | 99.2116 | 86.8612 | 753 | 25 | 755 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | segdup | * | 99.4565 | 99.4560 | 99.4570 | 94.0511 | 1097 | 6 | 1099 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | segdup | het | 99.2064 | 99.2775 | 99.1354 | 93.9383 | 687 | 5 | 688 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3163 | 97.0393 | 99.6273 | 57.4974 | 1606 | 49 | 1604 | 6 | 3 | 50.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | * | hetalt | 96.1260 | 92.8027 | 99.6962 | 58.0768 | 1947 | 151 | 1969 | 6 | 6 | 100.0000 | |