PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57951-58000 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I1_5 | segdup | het | 99.1669 | 99.4424 | 98.8930 | 95.2746 | 535 | 3 | 536 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.4721 | 99.6475 | 99.2974 | 88.2757 | 848 | 3 | 848 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.5020 | 99.5471 | 99.4570 | 86.4067 | 1099 | 5 | 1099 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.8449 | 99.8139 | 99.8759 | 69.1925 | 4828 | 9 | 4828 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | SNP | ti | map_l150_m0_e0 | homalt | 99.5462 | 99.3118 | 99.7817 | 72.6486 | 2742 | 19 | 2742 | 6 | 5 | 83.3333 | |
| bgallagher-sentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.3053 | 99.0106 | 99.6019 | 68.7862 | 1501 | 15 | 1501 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.9879 | 98.5887 | 99.3902 | 70.7665 | 978 | 14 | 978 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4462 | 99.3676 | 99.5249 | 88.0409 | 1257 | 8 | 1257 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9002 | 99.8860 | 99.9144 | 60.6431 | 7011 | 8 | 7007 | 6 | 3 | 50.0000 | |
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | homalt | 99.6221 | 99.4020 | 99.8433 | 61.4866 | 3823 | 23 | 3823 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | homalt | 99.5036 | 99.2796 | 99.7286 | 68.6827 | 2205 | 16 | 2205 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | segdup | homalt | 99.8611 | 99.9074 | 99.8149 | 89.4615 | 3235 | 3 | 3235 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 33.3333 | 91.2621 | 0 | 0 | 3 | 6 | 4 | 66.6667 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 91.5493 | 95.3806 | 0 | 0 | 65 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 91.5493 | 95.7485 | 0 | 0 | 65 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 93.6170 | 100.0000 | 88.0000 | 95.8882 | 1 | 0 | 44 | 6 | 4 | 66.6667 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 62.2642 | 60.0000 | 64.7059 | 96.4876 | 9 | 6 | 11 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 53.3333 | 50.0000 | 57.1429 | 89.8551 | 8 | 8 | 8 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.9597 | 62.1622 | 94.3925 | 87.7434 | 46 | 28 | 101 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 35.9600 | 22.9630 | 82.8571 | 58.3333 | 31 | 104 | 29 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | het | 96.8418 | 98.1982 | 95.5224 | 94.5946 | 109 | 2 | 128 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e0 | het | 97.1032 | 98.3471 | 95.8904 | 94.6986 | 119 | 2 | 140 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1098 | 98.3607 | 95.8904 | 94.8006 | 120 | 2 | 140 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 59.5745 | 66.6667 | 53.8462 | 93.8095 | 4 | 2 | 7 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 47.6190 | 50.0000 | 45.4545 | 94.3878 | 2 | 2 | 5 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m0_e0 | * | 87.7092 | 85.1064 | 90.4762 | 90.8828 | 40 | 7 | 57 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | het | 90.4649 | 88.0435 | 93.0233 | 92.0149 | 81 | 11 | 80 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 69.2308 | 0 | 26 | 2 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | het | 43.6447 | 30.6122 | 76.0000 | 62.1212 | 15 | 34 | 19 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 62.5000 | 47.6190 | 90.9091 | 74.4186 | 40 | 44 | 60 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 69.6394 | 53.9936 | 98.0519 | 57.5172 | 169 | 144 | 302 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l125_m0_e0 | het | 97.5753 | 96.8750 | 98.2857 | 85.5848 | 186 | 6 | 344 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m0_e0 | het | 97.5684 | 98.1132 | 97.0297 | 89.2267 | 104 | 2 | 196 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e0 | * | 97.1095 | 97.3451 | 96.8750 | 94.8855 | 110 | 3 | 186 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m2_e1 | * | 97.1292 | 97.3684 | 96.8912 | 95.0078 | 111 | 3 | 187 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 58.9695 | 42.1941 | 97.8873 | 36.0360 | 100 | 137 | 278 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.2290 | 62.1302 | 98.6047 | 43.8642 | 105 | 64 | 424 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 87.6416 | 80.8917 | 95.6204 | 51.7606 | 127 | 30 | 131 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | * | 67.1429 | 54.0230 | 88.6792 | 85.5978 | 47 | 40 | 47 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | * | 66.6667 | 53.3333 | 88.8889 | 86.2595 | 48 | 42 | 48 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | * | 66.2338 | 52.5773 | 89.4737 | 85.6784 | 51 | 46 | 51 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7176 | 98.5348 | 98.9011 | 76.6167 | 538 | 8 | 540 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | segdup | * | 99.0456 | 98.6401 | 99.4545 | 94.8352 | 1088 | 15 | 1094 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 86.0465 | 86.0465 | 86.0465 | 75.1445 | 37 | 6 | 37 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | * | 89.1165 | 82.1705 | 97.3451 | 85.2480 | 212 | 46 | 220 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | * | 89.1561 | 82.1970 | 97.4026 | 85.7934 | 217 | 47 | 225 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | * | 88.0846 | 80.3636 | 97.4468 | 85.8519 | 221 | 54 | 229 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | segdup | homalt | 94.3396 | 100.0000 | 89.2857 | 93.3492 | 50 | 0 | 50 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | HG002complexvar | hetalt | 57.7977 | 43.2836 | 86.9565 | 69.5364 | 145 | 190 | 40 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 16.6887 | 9.4737 | 70.0000 | 64.9123 | 9 | 86 | 14 | 6 | 6 | 100.0000 | |