PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57651-57700 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | C6_15 | HG002complexvar | * | 94.6429 | 100.0000 | 89.8305 | 90.1503 | 4 | 0 | 53 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 45.4545 | 92.3611 | 0 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 57.1429 | 97.6705 | 0 | 0 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 60.0000 | 96.3680 | 0 | 0 | 9 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 57.1429 | 97.6705 | 0 | 0 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | decoy | * | 62.5000 | 100.0000 | 45.4545 | 99.0196 | 6 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 57.1429 | 100.0000 | 40.0000 | 99.0566 | 4 | 0 | 4 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 62.5000 | 100.0000 | 45.4545 | 99.0081 | 5 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 62.5000 | 100.0000 | 45.4545 | 99.0152 | 5 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 86.7711 | 82.6667 | 91.3043 | 65.6716 | 62 | 13 | 63 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.5611 | 76.9231 | 89.0909 | 67.2619 | 10 | 3 | 49 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m1_e0 | homalt | 86.1830 | 76.7908 | 98.1928 | 83.9614 | 268 | 81 | 326 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e0 | homalt | 86.4651 | 77.1978 | 98.2609 | 84.8218 | 281 | 83 | 339 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 86.7834 | 77.6882 | 98.2906 | 84.8576 | 289 | 83 | 345 | 6 | 6 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | func_cds | het | 85.5576 | 89.6552 | 81.8182 | 50.0000 | 26 | 3 | 27 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 86.4629 | 91.6667 | 81.8182 | 85.2018 | 22 | 2 | 27 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.2492 | 92.4528 | 94.0594 | 60.0791 | 49 | 4 | 95 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 14.2857 | 89.2308 | 0 | 1 | 1 | 6 | 3 | 50.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m0_e0 | * | 61.5385 | 66.6667 | 57.1429 | 92.6316 | 4 | 2 | 8 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | het | 80.0000 | 88.8889 | 72.7273 | 89.8618 | 8 | 1 | 16 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | het | 80.0000 | 88.8889 | 72.7273 | 89.9083 | 8 | 1 | 16 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e0 | * | 61.7647 | 63.6364 | 60.0000 | 94.1176 | 7 | 4 | 9 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m2_e1 | * | 61.7647 | 63.6364 | 60.0000 | 94.1860 | 7 | 4 | 9 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | het | 85.8034 | 91.6667 | 80.6452 | 93.8370 | 22 | 2 | 25 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 89.6938 | 81.4584 | 99.7817 | 61.4370 | 4837 | 1101 | 2742 | 6 | 5 | 83.3333 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 87.0799 | 77.3066 | 99.6819 | 40.4484 | 4558 | 1338 | 1880 | 6 | 5 | 83.3333 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 87.0799 | 77.3066 | 99.6819 | 40.4484 | 4558 | 1338 | 1880 | 6 | 5 | 83.3333 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 80.6497 | 68.7500 | 97.5309 | 82.4295 | 143 | 65 | 237 | 6 | 2 | 33.3333 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 70.4907 | 56.6038 | 93.4066 | 98.0769 | 60 | 46 | 85 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 70.0082 | 55.7522 | 94.0594 | 98.0524 | 63 | 50 | 95 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 70.3456 | 56.1404 | 94.1748 | 98.0570 | 64 | 50 | 97 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 70.0000 | 71.4286 | 0 | 0 | 14 | 6 | 3 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | segdup | homalt | 91.5760 | 95.7447 | 87.7551 | 90.9926 | 45 | 2 | 43 | 6 | 2 | 33.3333 | |
| qzeng-custom | SNP | * | * | hetalt | 98.2537 | 97.2445 | 99.2840 | 55.4492 | 847 | 24 | 832 | 6 | 5 | 83.3333 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8211 | 99.9112 | 99.7312 | 57.1511 | 2250 | 2 | 2226 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | * | tech_badpromoters | het | 95.5975 | 98.7013 | 92.6829 | 49.3827 | 76 | 1 | 76 | 6 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3033 | 99.1013 | 99.5062 | 65.8995 | 1213 | 11 | 1209 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7261 | 99.8636 | 99.5890 | 49.1643 | 1464 | 2 | 1454 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4343 | 99.0271 | 99.8449 | 39.8008 | 3868 | 38 | 3863 | 6 | 3 | 50.0000 | |
| qzeng-custom | SNP | ti | map_l250_m1_e0 | homalt | 72.8401 | 57.4984 | 99.3478 | 88.5158 | 924 | 683 | 914 | 6 | 6 | 100.0000 | |
| qzeng-custom | SNP | tv | * | hetalt | 98.2537 | 97.2445 | 99.2840 | 55.4492 | 847 | 24 | 832 | 6 | 5 | 83.3333 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0381 | 99.3603 | 98.7179 | 86.0756 | 466 | 3 | 462 | 6 | 5 | 83.3333 | |
| qzeng-custom | SNP | tv | tech_badpromoters | * | 93.8212 | 95.8333 | 91.8919 | 51.6340 | 69 | 3 | 68 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | * | * | hetalt | 95.3681 | 91.1677 | 99.9742 | 56.5406 | 23008 | 2229 | 23230 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1781 | 98.5667 | 99.7971 | 74.2130 | 2957 | 43 | 2951 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7788 | 100.0000 | 99.5585 | 73.7137 | 1353 | 0 | 1353 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | homalt | 98.6220 | 98.4283 | 98.8166 | 82.4931 | 501 | 8 | 501 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m2_e1 | homalt | 98.1595 | 97.5610 | 98.7654 | 88.0266 | 480 | 12 | 480 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4524 | 99.5614 | 99.3435 | 66.3352 | 908 | 4 | 908 | 6 | 4 | 66.6667 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6345 | 97.9145 | 99.3651 | 67.4587 | 939 | 20 | 939 | 6 | 6 | 100.0000 | |