PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57501-57550 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 20.5128 | 14.8148 | 33.3333 | 91.0891 | 4 | 23 | 3 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.4497 | 80.3922 | 84.6154 | 93.4233 | 41 | 10 | 33 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | het | 98.3792 | 97.5547 | 99.2177 | 83.0610 | 758 | 19 | 761 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m1_e0 | * | 98.2131 | 97.6285 | 98.8048 | 88.8071 | 494 | 12 | 496 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.1594 | 97.4952 | 98.8327 | 89.9117 | 506 | 13 | 508 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.2012 | 97.5518 | 98.8593 | 89.9733 | 518 | 13 | 520 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | segdup | het | 98.7928 | 98.6989 | 98.8868 | 94.8759 | 531 | 7 | 533 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002complexvar | homalt | 98.6717 | 97.8583 | 99.4987 | 53.9792 | 1188 | 26 | 1191 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.0495 | 94.1176 | 96.0000 | 76.9231 | 144 | 9 | 144 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | het | 92.4188 | 89.5105 | 95.5224 | 83.4568 | 128 | 15 | 128 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8463 | 99.7898 | 99.9029 | 55.0600 | 6171 | 13 | 6171 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.8728 | 99.8982 | 99.8474 | 55.2916 | 3927 | 4 | 3927 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9243 | 99.8836 | 99.9650 | 55.5651 | 17157 | 20 | 17153 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9097 | 99.8737 | 99.9458 | 56.0006 | 11070 | 14 | 11066 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | SNP | ti | * | hetalt | 99.4012 | 99.8282 | 98.9779 | 50.2542 | 581 | 1 | 581 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8762 | 99.8119 | 99.9405 | 50.3909 | 10083 | 19 | 10083 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.7634 | 99.7296 | 99.7971 | 53.8905 | 2951 | 8 | 2951 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.6997 | 99.7269 | 99.6725 | 54.7543 | 1826 | 5 | 1826 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0392 | 97.6562 | 98.4252 | 84.5998 | 375 | 9 | 375 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 96.1877 | 95.9064 | 96.4706 | 94.3428 | 164 | 7 | 164 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 95.5357 | 96.3964 | 94.6903 | 94.5725 | 107 | 4 | 107 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | * | 96.4578 | 96.1957 | 96.7213 | 94.6460 | 177 | 7 | 177 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | het | 95.9016 | 96.6942 | 95.1220 | 94.7771 | 117 | 4 | 117 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | * | 96.4770 | 96.2162 | 96.7391 | 94.7489 | 178 | 7 | 178 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | het | 95.9350 | 96.7213 | 95.1613 | 94.8612 | 118 | 4 | 118 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | * | 97.5124 | 96.2672 | 98.7903 | 81.9898 | 490 | 19 | 490 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | het | 83.6199 | 89.3617 | 78.5714 | 93.1540 | 42 | 5 | 22 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9293 | 89.3204 | 96.8421 | 87.2226 | 184 | 22 | 184 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 86.2687 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3366 | 95.7143 | 99.0148 | 63.7284 | 603 | 27 | 603 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2716 | 99.5000 | 97.0732 | 60.1167 | 199 | 1 | 199 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3822 | 99.8227 | 98.9455 | 72.2032 | 563 | 1 | 563 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 86.7925 | 95.8333 | 79.3103 | 78.0303 | 23 | 1 | 23 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8397 | 95.0820 | 98.6637 | 80.8692 | 464 | 24 | 443 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | I6_15 | map_siren | * | 95.8124 | 93.7705 | 97.9452 | 80.9150 | 286 | 19 | 286 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | * | map_l250_m1_e0 | homalt | 99.4502 | 99.1474 | 99.7549 | 84.1101 | 2442 | 21 | 2442 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | * | map_l250_m2_e0 | homalt | 99.4772 | 99.1809 | 99.7753 | 85.3224 | 2664 | 22 | 2664 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | * | map_l250_m2_e1 | homalt | 99.4834 | 99.1906 | 99.7779 | 85.3835 | 2696 | 22 | 2696 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | HG002compoundhet | homalt | 99.9189 | 99.9189 | 99.9189 | 30.4421 | 7388 | 6 | 7388 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.8280 | 83.7838 | 99.1655 | 88.4275 | 713 | 138 | 713 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 93.9322 | 89.0399 | 99.3933 | 86.4223 | 983 | 121 | 983 | 6 | 4 | 66.6667 | |
| raldana-dualsentieon | SNP | ti | map_l125_m0_e0 | homalt | 99.6205 | 99.3765 | 99.8657 | 64.9902 | 4463 | 28 | 4463 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | SNP | tv | HG002compoundhet | het | 94.2957 | 89.3216 | 99.8564 | 53.2191 | 4174 | 499 | 4172 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7785 | 99.6681 | 99.8891 | 70.9180 | 5405 | 18 | 5405 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.8992 | 89.1688 | 99.1597 | 88.4671 | 708 | 86 | 708 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7785 | 99.6681 | 99.8891 | 70.9180 | 5405 | 18 | 5405 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4032 | 98.9855 | 99.8245 | 35.5338 | 3415 | 35 | 3412 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1057 | 98.5033 | 99.7155 | 36.0522 | 2106 | 32 | 2103 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | homalt | 99.8450 | 99.7567 | 99.9335 | 58.3702 | 9021 | 22 | 9021 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | homalt | 99.8479 | 99.7612 | 99.9348 | 60.9327 | 9192 | 22 | 9192 | 6 | 3 | 50.0000 | |