PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57451-57500 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.6757 | 64.3678 | 91.8033 | 82.6705 | 56 | 31 | 56 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5467 | 100.0000 | 99.0975 | 80.6361 | 549 | 0 | 549 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.1200 | 97.1631 | 99.0958 | 72.4464 | 548 | 16 | 548 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.2606 | 99.4444 | 99.0775 | 82.2062 | 537 | 3 | 537 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m0_e0 | * | 98.3897 | 98.3871 | 98.3923 | 88.1388 | 305 | 5 | 306 | 5 | 1 | 20.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m1_e0 | * | 95.2830 | 95.2830 | 95.2830 | 95.7275 | 101 | 5 | 101 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | * | 95.5752 | 95.5752 | 95.5752 | 96.0900 | 108 | 5 | 108 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | * | 95.6140 | 95.6140 | 95.6140 | 96.1745 | 109 | 5 | 109 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | homalt | 99.5047 | 99.4224 | 99.5871 | 77.9738 | 1205 | 7 | 1206 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | hetalt | 95.0099 | 90.5470 | 99.9355 | 28.7042 | 7730 | 807 | 7742 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 93.0748 | 89.3617 | 97.1098 | 66.2109 | 168 | 20 | 168 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9078 | 97.1503 | 98.6772 | 90.6644 | 375 | 11 | 373 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1404 | 95.8042 | 96.4789 | 92.5654 | 137 | 6 | 137 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8049 | 99.6537 | 99.9566 | 69.9831 | 11512 | 40 | 11514 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8049 | 99.6537 | 99.9566 | 69.9831 | 11512 | 40 | 11514 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.3435 | 99.1935 | 99.4939 | 70.5690 | 984 | 8 | 983 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | SNP | * | map_l250_m0_e0 | homalt | 98.7220 | 98.2512 | 99.1974 | 90.2732 | 618 | 11 | 618 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9604 | 99.9703 | 99.9505 | 48.8948 | 10099 | 3 | 10099 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.6486 | 83.4722 | 99.1749 | 87.8994 | 601 | 119 | 601 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8403 | 99.7607 | 99.9201 | 44.0150 | 6253 | 15 | 6253 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7436 | 99.6160 | 99.8716 | 27.5888 | 3891 | 15 | 3890 | 5 | 1 | 20.0000 | |
| raldana-dualsentieon | SNP | ti | map_l150_m0_e0 | homalt | 99.4913 | 99.1670 | 99.8177 | 71.1111 | 2738 | 23 | 2738 | 5 | 4 | 80.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.0221 | 96.4380 | 99.6592 | 65.6762 | 1462 | 54 | 1462 | 5 | 2 | 40.0000 | |
| raldana-dualsentieon | SNP | tv | map_siren | homalt | 99.9013 | 99.8318 | 99.9710 | 52.2802 | 17211 | 29 | 17208 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.8500 | 94.7664 | 99.0272 | 74.3896 | 507 | 28 | 509 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | homalt | 98.4183 | 98.5915 | 98.2456 | 87.8361 | 280 | 4 | 280 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | * | homalt | 99.0482 | 98.4043 | 99.7006 | 63.9931 | 1665 | 27 | 1665 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 88.3369 | 79.4872 | 99.4041 | 37.5744 | 775 | 200 | 834 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7076 | 97.8383 | 99.5925 | 68.2618 | 1222 | 27 | 1222 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.8899 | 98.2537 | 99.5345 | 61.1292 | 1069 | 19 | 1069 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7076 | 97.8383 | 99.5925 | 68.2618 | 1222 | 27 | 1222 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 90.2013 | 82.6531 | 99.2669 | 29.5455 | 648 | 136 | 677 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.4570 | 88.8571 | 98.5591 | 32.4903 | 311 | 39 | 342 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 84.7826 | 81.2500 | 88.6364 | 91.1824 | 39 | 9 | 39 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 85.7143 | 82.3529 | 89.3617 | 90.8382 | 42 | 9 | 42 | 5 | 2 | 40.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | het | 90.0217 | 87.1795 | 93.0556 | 91.7526 | 68 | 10 | 67 | 5 | 3 | 60.0000 | |
| rpoplin-dv42 | SNP | tv | map_l150_m0_e0 | homalt | 98.3607 | 97.1386 | 99.6139 | 76.6034 | 1290 | 38 | 1290 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | SNP | tv | map_l125_m0_e0 | homalt | 98.8647 | 98.0189 | 99.7251 | 70.7294 | 2177 | 44 | 2177 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3409 | 99.2474 | 99.4345 | 80.6493 | 1055 | 8 | 1055 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6717 | 99.6061 | 99.7373 | 45.9408 | 2276 | 9 | 2278 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.3266 | 99.6622 | 98.9933 | 82.4396 | 590 | 2 | 590 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.3475 | 99.6727 | 99.0244 | 83.2288 | 609 | 2 | 609 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.3569 | 99.6774 | 99.0385 | 83.3511 | 618 | 2 | 618 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.9275 | 97.9239 | 97.9310 | 91.1206 | 283 | 6 | 284 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.1559 | 98.4882 | 99.8328 | 57.1769 | 3583 | 55 | 3583 | 6 | 4 | 66.6667 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.6109 | 97.4679 | 99.7809 | 46.9392 | 2733 | 71 | 2733 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4239 | 91.9294 | 99.1946 | 24.7475 | 729 | 64 | 739 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.9068 | 92.2535 | 95.6204 | 43.3884 | 131 | 11 | 131 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3717 | 99.3717 | 99.3717 | 79.9201 | 949 | 6 | 949 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.3260 | 97.7233 | 98.9362 | 63.8924 | 558 | 13 | 558 | 6 | 5 | 83.3333 | |