PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57151-57200 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7813 | 99.6999 | 99.8628 | 43.7307 | 3655 | 11 | 3639 | 5 | 5 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 94.2808 | 94.1176 | 94.4444 | 90.3330 | 80 | 5 | 85 | 5 | 3 | 60.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0545 | 96.8421 | 97.2678 | 86.8156 | 92 | 3 | 178 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.5134 | 92.4528 | 98.7835 | 71.4781 | 98 | 8 | 406 | 5 | 2 | 40.0000 | |
| cchapple-custom | INDEL | I16_PLUS | map_siren | * | 96.0947 | 97.6744 | 94.5652 | 91.4736 | 84 | 2 | 87 | 5 | 2 | 40.0000 | |
| gduggal-snapplat | SNP | ti | map_l150_m0_e0 | homalt | 90.3251 | 82.5063 | 99.7809 | 77.2958 | 2278 | 483 | 2277 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 82.6052 | 70.6331 | 99.4641 | 48.4530 | 926 | 385 | 928 | 5 | 4 | 80.0000 | |
| gduggal-snapplat | SNP | tv | map_l100_m0_e0 | hetalt | 76.4706 | 81.2500 | 72.2222 | 85.4839 | 13 | 3 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 86.1111 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 77.2727 | 81.3559 | 0 | 0 | 17 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 75.0000 | 94.0299 | 0 | 0 | 15 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 75.0000 | 94.0299 | 0 | 0 | 15 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 86.3158 | 83.6735 | 89.1304 | 77.9904 | 41 | 8 | 41 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.1415 | 83.9662 | 92.7536 | 39.4737 | 199 | 38 | 64 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | * | 77.4194 | 72.7273 | 82.7586 | 80.5369 | 24 | 9 | 24 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | het | 85.0531 | 79.6610 | 91.2281 | 72.1951 | 47 | 12 | 52 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | het | 84.5604 | 78.6885 | 91.3793 | 74.1071 | 48 | 13 | 53 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | het | 84.5604 | 78.6885 | 91.3793 | 74.8918 | 48 | 13 | 53 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | SNP | * | func_cds | homalt | 99.9570 | 99.9857 | 99.9284 | 24.3691 | 6978 | 1 | 6978 | 5 | 1 | 20.0000 | |
| gduggal-snapfb | SNP | * | tech_badpromoters | homalt | 96.9697 | 100.0000 | 94.1176 | 62.7193 | 80 | 0 | 80 | 5 | 1 | 20.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 91.8033 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | ti | map_l250_m1_e0 | homalt | 95.2567 | 91.2259 | 99.6601 | 92.2128 | 1466 | 141 | 1466 | 5 | 4 | 80.0000 | |
| gduggal-snapplat | INDEL | * | segdup | hetalt | 55.6430 | 40.0000 | 91.3793 | 97.9993 | 52 | 78 | 53 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | homalt | 86.8336 | 77.6504 | 98.4802 | 88.9449 | 271 | 78 | 324 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.4375 | 78.5714 | 98.5591 | 89.4013 | 286 | 78 | 342 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | homalt | 87.2327 | 78.2258 | 98.5836 | 89.4248 | 291 | 81 | 348 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | het | 51.9481 | 62.5000 | 44.4444 | 81.2500 | 5 | 3 | 4 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 11.1111 | 8.3333 | 16.6667 | 72.7273 | 2 | 22 | 1 | 5 | 2 | 40.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | * | 46.1771 | 32.9268 | 77.2727 | 96.4573 | 27 | 55 | 17 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e0 | het | 45.7143 | 34.7826 | 66.6667 | 96.1340 | 16 | 30 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | * | 45.0221 | 31.7647 | 77.2727 | 96.4912 | 27 | 58 | 17 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l150_m2_e1 | het | 45.0704 | 34.0426 | 66.6667 | 96.1637 | 16 | 31 | 10 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 13.1980 | 7.2626 | 72.2222 | 76.0000 | 13 | 166 | 13 | 5 | 4 | 80.0000 | |
| gduggal-snapplat | SNP | * | map_l100_m0_e0 | hetalt | 76.4706 | 81.2500 | 72.2222 | 85.4839 | 13 | 3 | 13 | 5 | 5 | 100.0000 | |
| gduggal-snapplat | SNP | * | map_l150_m0_e0 | homalt | 89.7981 | 81.5847 | 99.8503 | 78.9397 | 3336 | 753 | 3336 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 62.5000 | 58.8235 | 66.6667 | 99.8072 | 10 | 7 | 10 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 75.0000 | 90.0000 | 64.2857 | 99.6130 | 9 | 1 | 9 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 76.7278 | 76.1905 | 77.2727 | 99.9025 | 16 | 5 | 17 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | homalt | 94.7040 | 92.6829 | 96.8153 | 91.0541 | 152 | 12 | 152 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | homalt | 93.4579 | 91.7431 | 95.2381 | 94.3760 | 100 | 9 | 100 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | homalt | 93.8053 | 92.1739 | 95.4955 | 94.7243 | 106 | 9 | 106 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e1 | homalt | 93.8596 | 92.2414 | 95.5357 | 94.7955 | 107 | 9 | 107 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | * | 81.4815 | 81.4815 | 81.4815 | 98.2330 | 22 | 5 | 22 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m1_e0 | het | 86.3636 | 95.0000 | 79.1667 | 97.6471 | 19 | 1 | 19 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | * | 81.4815 | 81.4815 | 81.4815 | 98.2922 | 22 | 5 | 22 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e0 | het | 86.3636 | 95.0000 | 79.1667 | 97.7528 | 19 | 1 | 19 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | * | 80.0000 | 78.5714 | 81.4815 | 98.3019 | 22 | 6 | 22 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m2_e1 | het | 86.3636 | 95.0000 | 79.1667 | 97.7716 | 19 | 1 | 19 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D1_5 | segdup | homalt | 94.4928 | 90.8078 | 98.4894 | 93.1837 | 326 | 33 | 326 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | D1_5 | tech_badpromoters | * | 73.6842 | 73.6842 | 73.6842 | 48.6486 | 14 | 5 | 14 | 5 | 5 | 100.0000 | |