PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56901-56950 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | I6_15 | segdup | het | 94.0117 | 93.9759 | 94.0476 | 91.1765 | 78 | 5 | 79 | 5 | 5 | 100.0000 | |
| mlin-fermikit | SNP | ti | map_l250_m0_e0 | het | 36.6957 | 22.5910 | 97.6852 | 83.7594 | 211 | 723 | 211 | 5 | 1 | 20.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | het | 33.2370 | 20.1049 | 95.8333 | 85.2399 | 115 | 457 | 115 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C16_PLUS | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 89.1304 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 87.1795 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 90.0000 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 90.9091 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 58.3333 | 88.4615 | 0 | 0 | 7 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 84.8485 | 100.0000 | 73.6842 | 97.0769 | 1 | 0 | 14 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 54.5455 | 96.3934 | 0 | 0 | 6 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | homalt | 61.5385 | 100.0000 | 44.4444 | 52.6316 | 4 | 0 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 54.5455 | 100.0000 | 37.5000 | 98.6395 | 2 | 0 | 3 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | homalt | 84.8485 | 100.0000 | 73.6842 | 95.0262 | 12 | 0 | 14 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | D1_5 | * | hetalt | 89.9947 | 83.6798 | 97.3404 | 85.7251 | 8573 | 1672 | 183 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4948 | 99.6956 | 99.2948 | 79.7023 | 655 | 2 | 704 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m1_e0 | * | 66.2037 | 61.1111 | 72.2222 | 98.0456 | 11 | 7 | 13 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e0 | * | 66.1017 | 59.0909 | 75.0000 | 98.0276 | 13 | 9 | 15 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l250_m2_e1 | * | 66.1017 | 59.0909 | 75.0000 | 98.0658 | 13 | 9 | 15 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | D6_15 | segdup | homalt | 94.9495 | 100.0000 | 90.3846 | 91.3765 | 50 | 0 | 47 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I16_PLUS | HG002complexvar | hetalt | 80.5997 | 68.6567 | 97.5728 | 58.5513 | 230 | 105 | 201 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | I16_PLUS | func_cds | * | 77.1930 | 91.6667 | 66.6667 | 67.3913 | 11 | 1 | 10 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 26.6667 | 25.0000 | 28.5714 | 75.0000 | 1 | 3 | 2 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 36.3636 | 50.0000 | 28.5714 | 68.1818 | 1 | 1 | 2 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.9826 | 70.2857 | 98.3498 | 45.7961 | 123 | 52 | 298 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 48.0000 | 66.6667 | 37.5000 | 87.6923 | 2 | 1 | 3 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 53.3333 | 66.6667 | 44.4444 | 88.0000 | 2 | 1 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 53.3333 | 66.6667 | 44.4444 | 88.1579 | 2 | 1 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | map_l150_m1_e0 | * | 63.9594 | 63.6364 | 64.2857 | 94.1909 | 7 | 4 | 9 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I16_PLUS | segdup | homalt | 87.8049 | 100.0000 | 78.2609 | 90.9091 | 19 | 0 | 18 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.7740 | 98.0000 | 97.5490 | 59.2814 | 196 | 4 | 199 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4037 | 99.7908 | 99.0196 | 71.3644 | 477 | 1 | 505 | 5 | 2 | 40.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 99.9783 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | het | 74.5771 | 61.3208 | 95.1456 | 97.1594 | 65 | 41 | 98 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 77.2881 | 66.6667 | 91.9355 | 98.3812 | 40 | 20 | 57 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 75.4127 | 63.6364 | 92.5373 | 98.3941 | 42 | 24 | 62 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 75.4491 | 63.6364 | 92.6471 | 98.4019 | 42 | 24 | 63 | 5 | 4 | 80.0000 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m0_e0 | * | 36.3636 | 25.0000 | 66.6667 | 96.8750 | 2 | 6 | 10 | 5 | 1 | 20.0000 | |
| qzeng-custom | SNP | * | func_cds | homalt | 99.8779 | 99.8281 | 99.9278 | 20.5349 | 6967 | 12 | 6918 | 5 | 3 | 60.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.5632 | 99.4406 | 99.6861 | 52.5328 | 1600 | 9 | 1588 | 5 | 3 | 60.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8173 | 100.0000 | 99.6353 | 62.2834 | 1383 | 0 | 1366 | 5 | 2 | 40.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6334 | 99.4522 | 99.8153 | 34.5977 | 2723 | 15 | 2702 | 5 | 4 | 80.0000 | |
| qzeng-custom | SNP | ti | func_cds | homalt | 99.8860 | 99.8673 | 99.9047 | 18.9998 | 5268 | 7 | 5243 | 5 | 3 | 60.0000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7078 | 100.0000 | 99.4172 | 52.2803 | 858 | 0 | 853 | 5 | 2 | 40.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 87.5000 | 73.6842 | 97.7778 | 14 | 2 | 14 | 5 | 0 | 0.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 69.5652 | 80.0000 | 61.5385 | 98.1429 | 8 | 2 | 8 | 5 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | tech_badpromoters | het | 91.4286 | 96.9697 | 86.4865 | 51.9481 | 32 | 1 | 32 | 5 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | HG002complexvar | hetalt | 95.3862 | 91.2949 | 99.8613 | 67.7087 | 3377 | 322 | 3600 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m0_e0 | homalt | 98.0600 | 97.8873 | 98.2332 | 86.1002 | 278 | 6 | 278 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | INDEL | * | map_l150_m1_e0 | homalt | 98.1461 | 97.4026 | 98.9011 | 86.8269 | 450 | 12 | 450 | 5 | 2 | 40.0000 | |