PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56651-56700 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0544 | 97.1545 | 98.9712 | 53.5817 | 478 | 14 | 481 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 84.3750 | 96.1306 | 0 | 0 | 27 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 72.2222 | 95.4315 | 0 | 0 | 13 | 5 | 1 | 20.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 72.7273 | 75.0000 | 70.5882 | 76.0563 | 12 | 4 | 12 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | * | 76.3282 | 68.0851 | 86.8421 | 91.3832 | 32 | 15 | 33 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | het | 76.5957 | 75.0000 | 78.2609 | 93.5393 | 18 | 6 | 18 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | * | 94.7674 | 92.6136 | 97.0238 | 92.2616 | 163 | 13 | 163 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | INDEL | I6_15 | func_cds | * | 81.4815 | 76.7442 | 86.8421 | 33.3333 | 33 | 10 | 33 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | func_cds | het | 84.0000 | 87.5000 | 80.7692 | 33.3333 | 21 | 3 | 21 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 91.0714 | 0 | 0 | 0 | 5 | 5 | 100.0000 | ||
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | * | 53.6585 | 44.0000 | 68.7500 | 94.2029 | 11 | 14 | 11 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | het | 57.1429 | 53.3333 | 61.5385 | 94.3723 | 8 | 7 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | * | 53.6585 | 44.0000 | 68.7500 | 95.0156 | 11 | 14 | 11 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | het | 57.1429 | 53.3333 | 61.5385 | 95.0758 | 8 | 7 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | het | 55.1724 | 50.0000 | 61.5385 | 95.2727 | 8 | 8 | 8 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 97.8038 | 10 | 0 | 10 | 5 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | ti | map_l150_m0_e0 | homalt | 98.3835 | 96.9938 | 99.8136 | 78.2964 | 2678 | 83 | 2678 | 5 | 4 | 80.0000 | |
| jpowers-varprowl | SNP | tv | func_cds | homalt | 99.8535 | 100.0000 | 99.7074 | 29.3802 | 1704 | 0 | 1704 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2379 | 97.0149 | 97.4619 | 86.3856 | 195 | 6 | 192 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.9021 | 98.3051 | 99.5064 | 29.1608 | 928 | 16 | 1008 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_siren | * | 94.6492 | 93.0070 | 96.3504 | 92.5503 | 133 | 10 | 132 | 5 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6106 | 99.5460 | 99.6753 | 76.5566 | 1535 | 7 | 1535 | 5 | 3 | 60.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.8213 | 96.4615 | 99.2200 | 21.9245 | 627 | 23 | 636 | 5 | 4 | 80.0000 | |
| jli-custom | INDEL | D1_5 | map_siren | homalt | 99.5293 | 99.4863 | 99.5723 | 80.0137 | 1162 | 6 | 1164 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m0_e0 | * | 96.1538 | 97.0874 | 95.2381 | 87.4702 | 100 | 3 | 100 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m1_e0 | het | 96.8658 | 97.6190 | 96.1240 | 87.0221 | 123 | 3 | 124 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 96.5923 | 96.9466 | 96.2406 | 87.4882 | 127 | 4 | 128 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 96.6925 | 97.0370 | 96.3504 | 87.3733 | 131 | 4 | 132 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | D6_15 | map_siren | het | 97.8495 | 97.5000 | 98.2014 | 83.8184 | 273 | 7 | 273 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.5484 | 95.0820 | 92.0635 | 90.0943 | 58 | 3 | 58 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | * | hetalt | 96.7648 | 93.7740 | 99.9527 | 62.3212 | 10498 | 697 | 10559 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.2743 | 85.1852 | 64.2857 | 85.4167 | 23 | 4 | 9 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 98.5507 | 98.7097 | 98.3923 | 87.2069 | 306 | 4 | 306 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | * | 99.2158 | 99.0361 | 99.3961 | 84.2466 | 822 | 8 | 823 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e0 | * | 99.1816 | 98.9498 | 99.4145 | 85.5524 | 848 | 9 | 849 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | * | 99.1939 | 98.9655 | 99.4233 | 85.7143 | 861 | 9 | 862 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 98.9129 | 98.8142 | 99.0119 | 87.8511 | 500 | 6 | 501 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 98.8426 | 98.6513 | 99.0347 | 89.1016 | 512 | 7 | 513 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 98.8688 | 98.6817 | 99.0566 | 89.1616 | 524 | 7 | 525 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I1_5 | segdup | * | 99.3377 | 99.1501 | 99.5261 | 94.0200 | 1050 | 9 | 1050 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.1490 | 92.7126 | 97.7169 | 78.3168 | 229 | 18 | 214 | 5 | 2 | 40.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.3256 | 94.9234 | 99.8525 | 39.2800 | 3347 | 179 | 3385 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.3586 | 95.0374 | 99.7961 | 32.0399 | 2413 | 126 | 2447 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.2273 | 94.7806 | 99.8035 | 33.5162 | 2506 | 138 | 2540 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.3256 | 94.9234 | 99.8525 | 39.2800 | 3347 | 179 | 3385 | 5 | 5 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3069 | 99.2443 | 99.3695 | 89.2982 | 788 | 6 | 788 | 5 | 5 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6571 | 99.3874 | 99.9283 | 62.5798 | 6976 | 43 | 6972 | 5 | 3 | 60.0000 | |
| ckim-vqsr | SNP | tv | segdup | homalt | 98.5612 | 97.3132 | 99.8416 | 90.0895 | 3151 | 87 | 3151 | 5 | 5 | 100.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 95.1053 | 94.3548 | 95.8678 | 99.9213 | 117 | 7 | 116 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7674 | 99.6720 | 99.8630 | 53.6272 | 3646 | 12 | 3645 | 5 | 1 | 20.0000 | |