PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56451-56500 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 37.5000 | 91.1111 | 0 | 0 | 3 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 16.6667 | 97.4026 | 0 | 0 | 1 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 94.5652 | 91.2130 | 0 | 0 | 87 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 94.5652 | 79.6460 | 0 | 0 | 87 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 70.5882 | 91.2371 | 0 | 0 | 12 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 54.5455 | 92.8571 | 0 | 0 | 6 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 54.5455 | 96.2963 | 0 | 0 | 6 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 37.5000 | 96.9925 | 0 | 0 | 3 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 58.3333 | 96.3526 | 0 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 44.4444 | 96.9595 | 0 | 0 | 4 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 58.3333 | 96.4706 | 0 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 44.4444 | 97.0588 | 0 | 0 | 4 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | * | 78.5714 | 91.6667 | 68.7500 | 74.1935 | 11 | 1 | 11 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | func_cds | het | 76.1905 | 100.0000 | 61.5385 | 77.1930 | 8 | 0 | 8 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 72.3100 | 56.8934 | 99.1870 | 55.0110 | 619 | 469 | 610 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m0_e0 | * | 73.6842 | 100.0000 | 58.3333 | 95.6364 | 7 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m0_e0 | het | 73.6842 | 100.0000 | 58.3333 | 95.1417 | 7 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m1_e0 | * | 36.3636 | 50.0000 | 28.5714 | 97.0954 | 2 | 2 | 2 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e0 | * | 46.1538 | 60.0000 | 37.5000 | 97.0803 | 3 | 2 | 3 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | * | 46.1538 | 60.0000 | 37.5000 | 97.1119 | 3 | 2 | 3 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 16.8906 | 9.3023 | 91.6667 | 74.3590 | 56 | 546 | 55 | 5 | 5 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | func_cds | * | 74.0741 | 83.3333 | 66.6667 | 65.1163 | 10 | 2 | 10 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | func_cds | het | 78.2609 | 100.0000 | 64.2857 | 60.0000 | 9 | 0 | 9 | 5 | 1 | 20.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | * | 58.8235 | 71.4286 | 50.0000 | 96.1686 | 5 | 2 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m1_e0 | het | 61.5385 | 100.0000 | 44.4444 | 96.2185 | 4 | 0 | 4 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | * | 63.1579 | 75.0000 | 54.5455 | 96.1404 | 6 | 2 | 6 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 96.1538 | 5 | 0 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | * | 63.1579 | 75.0000 | 54.5455 | 96.2963 | 6 | 2 | 6 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 96.2825 | 5 | 0 | 5 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 97.7082 | 95.6585 | 99.8477 | 51.9462 | 3305 | 150 | 3279 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.0887 | 98.2753 | 99.9156 | 51.4864 | 5983 | 105 | 5919 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.5483 | 97.3169 | 99.8112 | 34.2765 | 2684 | 74 | 2643 | 5 | 3 | 60.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.6463 | 80.5556 | 84.8485 | 92.3788 | 29 | 7 | 28 | 5 | 2 | 40.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | hetalt | 60.7460 | 57.5758 | 64.2857 | 94.2857 | 19 | 14 | 9 | 5 | 2 | 40.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 72.0000 | 62.7907 | 84.3750 | 80.1242 | 27 | 16 | 27 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 89.1443 | 80.8806 | 99.2888 | 68.7833 | 698 | 165 | 698 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 75.9907 | 61.6646 | 98.9879 | 43.7998 | 489 | 304 | 489 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.9339 | 77.1098 | 99.6266 | 47.5519 | 1334 | 396 | 1334 | 5 | 2 | 40.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 40.1515 | 25.7282 | 91.3793 | 89.3186 | 53 | 153 | 53 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 35.7143 | 22.5564 | 85.7143 | 93.7500 | 30 | 103 | 30 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 70.6542 | 55.4252 | 97.4227 | 64.6630 | 189 | 152 | 189 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 60.0000 | 52.1739 | 70.5882 | 90.1163 | 12 | 11 | 12 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 39.1304 | 25.4717 | 84.3750 | 92.8731 | 27 | 79 | 27 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 37.0130 | 23.1707 | 91.9355 | 92.3551 | 57 | 189 | 57 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 70.3704 | 55.0000 | 97.6636 | 65.3160 | 209 | 171 | 209 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 59.7926 | 44.5455 | 90.9091 | 96.3211 | 49 | 61 | 50 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 49.0051 | 33.5664 | 90.7407 | 98.6432 | 48 | 95 | 49 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7591 | 92.2386 | 99.5591 | 69.5815 | 1129 | 95 | 1129 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 40.6561 | 26.7327 | 84.8485 | 99.0214 | 27 | 74 | 28 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | SNP | tv | segdup | homalt | 98.7827 | 97.7455 | 99.8422 | 90.3210 | 3165 | 73 | 3164 | 5 | 5 | 100.0000 | |