PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56201-56250 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 80.2054 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m1_e0 | * | 95.7346 | 95.2830 | 96.1905 | 95.9350 | 101 | 5 | 101 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e0 | * | 96.0000 | 95.5752 | 96.4286 | 96.3170 | 108 | 5 | 108 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 96.0352 | 95.6140 | 96.4602 | 96.4001 | 109 | 5 | 109 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.7468 | 98.3607 | 99.1361 | 82.2265 | 480 | 8 | 459 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 98.0392 | 97.1503 | 98.9446 | 91.0613 | 375 | 11 | 375 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.9964 | 97.4638 | 98.5348 | 91.1104 | 269 | 7 | 269 | 4 | 2 | 50.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9343 | 99.9343 | 99.9343 | 54.3868 | 6084 | 4 | 6084 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.0000 | 93.0070 | 97.0803 | 92.6304 | 133 | 10 | 133 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5665 | 95.0980 | 96.0396 | 92.5019 | 97 | 5 | 97 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.8570 | 99.8412 | 99.8729 | 71.3127 | 3143 | 5 | 3143 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.3125 | 98.8799 | 99.7489 | 85.0633 | 1589 | 18 | 1589 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e0 | homalt | 99.3685 | 98.9708 | 99.7695 | 86.1400 | 1731 | 18 | 1731 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | map_l250_m2_e1 | homalt | 99.3768 | 98.9842 | 99.7725 | 86.1825 | 1754 | 18 | 1754 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | ti | segdup | homalt | 99.9000 | 99.8534 | 99.9467 | 87.4231 | 7494 | 11 | 7494 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.5475 | 99.3976 | 99.6979 | 74.9100 | 1320 | 8 | 1320 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | SNP | tv | map_l250_m0_e0 | homalt | 98.1912 | 98.4456 | 97.9381 | 92.2400 | 190 | 3 | 190 | 4 | 3 | 75.0000 | |
| cchapple-custom | INDEL | * | func_cds | * | 98.9926 | 98.8764 | 99.1091 | 40.8432 | 440 | 5 | 445 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5925 | 99.4826 | 99.7026 | 70.3810 | 1346 | 7 | 1341 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2973 | 98.6962 | 99.9057 | 48.2245 | 4239 | 56 | 4239 | 4 | 1 | 25.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7288 | 99.5616 | 99.8965 | 59.3927 | 3861 | 17 | 3861 | 4 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6384 | 99.4387 | 99.8390 | 60.5902 | 2480 | 14 | 2480 | 4 | 0 | 0.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8767 | 99.8193 | 99.9342 | 54.4187 | 6077 | 11 | 6077 | 4 | 4 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.0000 | 93.0070 | 97.0803 | 92.6620 | 133 | 10 | 133 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5665 | 95.0980 | 96.0396 | 92.5296 | 97 | 5 | 97 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.2387 | 96.8364 | 99.6823 | 87.5285 | 1255 | 41 | 1255 | 4 | 4 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.7884 | 96.1222 | 99.5134 | 88.6370 | 818 | 33 | 818 | 4 | 4 | 100.0000 | |
| astatham-gatk | SNP | ti | segdup | homalt | 99.8666 | 99.7868 | 99.9466 | 87.4281 | 7489 | 16 | 7489 | 4 | 4 | 100.0000 | |
| astatham-gatk | SNP | tv | func_cds | * | 99.8283 | 99.7483 | 99.9083 | 29.1951 | 4360 | 11 | 4359 | 4 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | func_cds | het | 99.7173 | 99.5860 | 99.8490 | 31.6916 | 2646 | 11 | 2645 | 4 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1039 | 98.4828 | 99.7328 | 68.8838 | 1493 | 23 | 1493 | 4 | 1 | 25.0000 | |
| astatham-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.6775 | 97.7823 | 99.5893 | 70.8819 | 970 | 22 | 970 | 4 | 1 | 25.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2107 | 98.4898 | 99.9421 | 60.9841 | 6913 | 106 | 6910 | 4 | 2 | 50.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5825 | 99.2217 | 99.9459 | 39.6327 | 7394 | 58 | 7391 | 4 | 1 | 25.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3998 | 98.8910 | 99.9138 | 41.4542 | 4637 | 52 | 4634 | 4 | 1 | 25.0000 | |
| astatham-gatk | SNP | tv | map_l150_m0_e0 | homalt | 98.8226 | 97.9669 | 99.6935 | 75.2231 | 1301 | 27 | 1301 | 4 | 3 | 75.0000 | |
| astatham-gatk | SNP | tv | map_l250_m0_e0 | homalt | 97.3958 | 96.8912 | 97.9058 | 92.3692 | 187 | 6 | 187 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.8256 | 96.4486 | 99.2424 | 73.9001 | 516 | 19 | 524 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.4647 | 88.7097 | 96.5517 | 99.9368 | 110 | 14 | 112 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 89.7542 | 85.0575 | 95.0000 | 99.9024 | 74 | 13 | 76 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 20.0000 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 89.1892 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 42.8571 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 69.2308 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 82.6087 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.3043 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 33.3333 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||