PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55701-55750 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4763 | 99.0588 | 99.8974 | 52.8829 | 3894 | 37 | 3894 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2134 | 84.7150 | 98.7915 | 90.8715 | 327 | 59 | 327 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.4462 | 80.4348 | 98.2301 | 90.4922 | 222 | 54 | 222 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.9134 | 99.8615 | 99.9653 | 69.5900 | 11536 | 16 | 11536 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6626 | 99.4266 | 99.8998 | 45.8345 | 3988 | 23 | 3988 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4872 | 99.1352 | 99.8416 | 45.8405 | 2522 | 22 | 2522 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 93.9208 | 88.8117 | 99.6537 | 86.9255 | 1151 | 145 | 1151 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.8046 | 83.5488 | 99.4406 | 88.0415 | 711 | 140 | 711 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.9134 | 99.8615 | 99.9653 | 69.5900 | 11536 | 16 | 11536 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | SNP | tv | func_cds | * | 99.9314 | 99.9542 | 99.9085 | 27.9499 | 4369 | 2 | 4368 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | func_cds | het | 99.8871 | 99.9247 | 99.8495 | 28.9115 | 2655 | 2 | 2654 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9059 | 99.8514 | 99.9603 | 61.6429 | 10082 | 15 | 10082 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8339 | 99.7418 | 99.9261 | 75.6588 | 5409 | 14 | 5409 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.8128 | 92.2530 | 99.6584 | 86.7818 | 1167 | 98 | 1167 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.6000 | 88.4131 | 99.4334 | 87.7068 | 702 | 92 | 702 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8339 | 99.7418 | 99.9261 | 75.6588 | 5409 | 14 | 5409 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | * | HG002compoundhet | hetalt | 96.9221 | 94.0429 | 99.9832 | 52.1234 | 23680 | 1500 | 23795 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.1791 | 87.3169 | 99.8851 | 40.5059 | 3339 | 485 | 3477 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.8168 | 95.7514 | 99.9731 | 60.5697 | 14762 | 655 | 14877 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4129 | 99.0178 | 99.8112 | 75.1670 | 2117 | 21 | 2115 | 4 | 1 | 25.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.6178 | 95.3805 | 99.9625 | 30.9240 | 10592 | 513 | 10671 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.6612 | 95.4654 | 99.9603 | 33.6622 | 10000 | 475 | 10082 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 87.3181 | 84.0000 | 90.9091 | 83.8235 | 42 | 8 | 40 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8636 | 99.8363 | 99.8908 | 48.6619 | 3660 | 6 | 3660 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6820 | 95.7792 | 99.6619 | 56.9975 | 1180 | 52 | 1179 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 84.9057 | 78.9474 | 91.8367 | 99.3649 | 45 | 12 | 45 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_siren | * | 95.3756 | 95.3488 | 95.4023 | 91.3087 | 82 | 4 | 83 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5960 | 99.4864 | 99.7059 | 76.5153 | 1356 | 7 | 1356 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8615 | 98.0480 | 99.6885 | 70.4692 | 1306 | 26 | 1280 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6041 | 99.3604 | 99.8489 | 69.0699 | 2641 | 17 | 2643 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m1_e0 | * | 96.7136 | 97.1698 | 96.2617 | 95.2168 | 103 | 3 | 103 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e0 | * | 96.9163 | 97.3451 | 96.4912 | 95.6472 | 110 | 3 | 110 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e1 | * | 96.9432 | 97.3684 | 96.5217 | 95.7407 | 111 | 3 | 111 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.0000 | 91.6667 | 84.6154 | 79.0323 | 22 | 2 | 22 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.2668 | 95.4918 | 99.1091 | 81.8292 | 466 | 22 | 445 | 4 | 1 | 25.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.3263 | 98.8086 | 99.8495 | 53.5477 | 2654 | 32 | 2654 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9406 | 99.9208 | 99.9604 | 49.7187 | 10094 | 8 | 10094 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8787 | 99.7922 | 99.9653 | 69.1476 | 11528 | 24 | 11528 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.3693 | 98.9623 | 99.7797 | 53.9086 | 1812 | 19 | 1812 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.5663 | 85.9729 | 97.9381 | 91.4197 | 190 | 31 | 190 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.7527 | 83.5526 | 96.9466 | 91.3302 | 127 | 25 | 127 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8787 | 99.7922 | 99.9653 | 69.1476 | 11528 | 24 | 11528 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.4050 | 96.9403 | 99.9148 | 68.3120 | 4689 | 148 | 4689 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.5626 | 95.3621 | 99.8669 | 70.0866 | 3002 | 146 | 3002 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | func_cds | * | 99.9428 | 99.9771 | 99.9085 | 28.1938 | 4370 | 1 | 4369 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | func_cds | het | 99.9059 | 99.9624 | 99.8496 | 29.2819 | 2656 | 1 | 2655 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9108 | 99.8613 | 99.9603 | 61.0721 | 10083 | 14 | 10083 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | segdup | homalt | 99.6878 | 99.7917 | 99.5842 | 93.1783 | 958 | 2 | 958 | 4 | 4 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9812 | 98.8739 | 99.0888 | 73.5383 | 439 | 5 | 435 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 98.2592 | 98.0695 | 98.4496 | 56.8562 | 254 | 5 | 254 | 4 | 3 | 75.0000 | |