PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
5501-5550 / 86044 show all
qzeng-customINDELD1_5map_l125_m1_e0hetalt
81.8182
69.2308
100.0000
96.9697
94100
qzeng-customINDELD1_5map_l125_m2_e0hetalt
84.6154
73.3333
100.0000
97.5610
114100
qzeng-customINDELD1_5map_l125_m2_e1hetalt
84.6154
73.3333
100.0000
97.5610
114100
qzeng-customINDELD1_5map_l150_m0_e0hetalt
50.0000
100.0000
11000
qzeng-customINDELD1_5map_l150_m1_e0hetalt
57.1429
100.0000
43000
qzeng-customINDELD1_5map_l150_m2_e0hetalt
57.1429
100.0000
43000
qzeng-customINDELD1_5map_l150_m2_e1hetalt
62.5000
100.0000
53000
qzeng-customINDELD1_5map_l250_m0_e0hetalt
0.0000
100.0000
00000
qzeng-customINDELD1_5map_l250_m0_e0homalt
76.1905
61.5385
100.0000
97.6827
851300
qzeng-customINDELD1_5map_l250_m1_e0hetalt
66.6667
100.0000
21000
qzeng-customINDELD1_5map_l250_m2_e0hetalt
66.6667
100.0000
21000
qzeng-customINDELD1_5map_l250_m2_e1hetalt
66.6667
100.0000
21000
qzeng-customINDELD1_5map_sirenhetalt
90.1961
82.1429
100.0000
94.0476
6915500
qzeng-customINDELD1_5segduphetalt
92.3077
100.0000
484000
qzeng-customINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9948
10100
qzeng-customINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9933
10100
qzeng-customINDELD1_5segdupwithalthetalt
0.0000
100.0000
00000
qzeng-customINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
qzeng-customINDELD1_5tech_badpromoters*
100.0000
100.0000
100.0000
44.8276
1901600
qzeng-customINDELD1_5tech_badpromotershet
100.0000
100.0000
100.0000
46.6667
80800
qzeng-customINDELD1_5tech_badpromotershetalt
0.0000
100.0000
0.0000
0.0000
20000
qzeng-customINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
42.8571
90800
qzeng-customINDELD6_15*hetalt
81.6614
100.0000
66751499000
qzeng-customINDELD6_15HG002complexvarhetalt
85.8835
100.0000
870143000
qzeng-customINDELD6_15HG002compoundhethetalt
81.6710
100.0000
66571494000
qzeng-customINDELD6_15decoy*
100.0000
100.0000
10000
qzeng-customINDELD6_15decoyhet
0.0000
100.0000
00000
qzeng-customINDELD6_15decoyhetalt
0.0000
100.0000
0.0000
0.0000
10000
qzeng-customINDELD6_15decoyhomalt
0.0000
100.0000
00000
qzeng-customINDELD6_15func_cdshetalt
0.0000
50.0000
0.0000
0.0000
11000
qzeng-customINDELD6_15lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
67.5824
100.0000
1599767000
qzeng-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
50.0000
0.0000
0.0000
11000
qzeng-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
98.4127
10100
qzeng-customINDELD6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
85.6723
100.0000
5836976000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
81.4493
100.0000
65641495000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
66.6667
100.0000
2613000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
50.0000
0.0000
0.0000
11000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
100.0000
98.3333
00100
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
80.0000
100.0000
4411000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
81.8182
0.0000
0.0000
276000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
66.1007
100.0000
1129579000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
10000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
80.6665
100.0000
57371375000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
85.1600
0.0000
0.0000
4631807000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
80.6384
100.0000
57851389000
qzeng-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
81.4493
100.0000
65641495000
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
83.8433
0.0000
0.0000
4001771000
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
43.4633
100.0000
379493000
qzeng-customINDELD6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000