PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5501-5550 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 81.8182 | 69.2308 | 100.0000 | 96.9697 | 9 | 4 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 84.6154 | 73.3333 | 100.0000 | 97.5610 | 11 | 4 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 84.6154 | 73.3333 | 100.0000 | 97.5610 | 11 | 4 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 57.1429 | 100.0000 | 4 | 3 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 57.1429 | 100.0000 | 4 | 3 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 62.5000 | 100.0000 | 5 | 3 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l250_m0_e0 | homalt | 76.1905 | 61.5385 | 100.0000 | 97.6827 | 8 | 5 | 13 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 100.0000 | 2 | 1 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | map_siren | hetalt | 90.1961 | 82.1429 | 100.0000 | 94.0476 | 69 | 15 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | segdup | hetalt | 92.3077 | 100.0000 | 48 | 4 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9948 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9933 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 44.8276 | 19 | 0 | 16 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 9 | 0 | 8 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | * | hetalt | 81.6614 | 100.0000 | 6675 | 1499 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | HG002complexvar | hetalt | 85.8835 | 100.0000 | 870 | 143 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | HG002compoundhet | hetalt | 81.6710 | 100.0000 | 6657 | 1494 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.5824 | 100.0000 | 1599 | 767 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.4127 | 1 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.6723 | 100.0000 | 5836 | 976 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 81.4493 | 100.0000 | 6564 | 1495 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 66.6667 | 100.0000 | 26 | 13 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 98.3333 | 0 | 0 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 80.0000 | 100.0000 | 44 | 11 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 81.8182 | 0.0000 | 0.0000 | 27 | 6 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 66.1007 | 100.0000 | 1129 | 579 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 80.6665 | 100.0000 | 5737 | 1375 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 85.1600 | 0.0000 | 0.0000 | 4631 | 807 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 80.6384 | 100.0000 | 5785 | 1389 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 81.4493 | 100.0000 | 6564 | 1495 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 83.8433 | 0.0000 | 0.0000 | 4001 | 771 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 43.4633 | 100.0000 | 379 | 493 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||