PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
5451-5500 / 86044 show all
qzeng-customINDELD1_5func_cdshetalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELD1_5func_cdshomalt
100.0000
100.0000
100.0000
21.2766
7407400
qzeng-customINDELD1_5lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
79.6963
66.2459
100.0000
93.7500
1207615100
qzeng-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
95.2381
90.9091
100.0000
99.6674
101600
qzeng-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
87.5000
100.0000
99.7253
71400
qzeng-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
10000
qzeng-customINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.4100
20200
qzeng-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
92.5939
86.2091
100.0000
89.7909
801412828300
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
90.2681
82.2624
100.0000
94.4664
764316481400
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
87.8049
78.2609
100.0000
87.5000
5415100
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
94.7368
90.0000
100.0000
99.7088
91500
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
92.3077
85.7143
100.0000
99.7823
61300
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
10000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3939
20200
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
95.7746
91.8919
100.0000
95.3846
686300
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
95.7746
91.8919
100.0000
95.0000
343300
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
64.9109
100.0000
838453000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9011
10100
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.7805
10100
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
89.5484
81.0747
100.0000
93.6170
65631532300
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
91.3158
84.0193
100.0000
93.1818
57361091300
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
89.5167
81.0229
100.0000
94.3548
66221551700
qzeng-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
90.2681
82.2624
100.0000
94.4664
764316481400
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
91.5505
84.4177
100.0000
89.0909
581310731200
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
27.9022
100.0000
137354000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.3783
94.8905
100.0000
85.0000
390215100
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
10000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
10000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
96.7853
93.7709
100.0000
79.8165
1400932200
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
80.1538
100.0000
521129000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
98.3498
96.7532
100.0000
68.3333
447151900
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
79.5918
0.0000
0.0000
3910000
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
57.5758
1301400
qzeng-customINDELD1_5map_l100_m0_e0hetalt
85.7143
100.0000
122000
qzeng-customINDELD1_5map_l100_m1_e0hetalt
89.4118
80.8511
100.0000
95.5556
389200
qzeng-customINDELD1_5map_l100_m2_e0hetalt
88.3721
79.1667
100.0000
96.0784
3810200
qzeng-customINDELD1_5map_l100_m2_e1hetalt
89.1304
80.3922
100.0000
96.0784
4110200
qzeng-customINDELD1_5map_l125_m0_e0hetalt
66.6667
100.0000
21000