PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54851-54900 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 61.5385 | 80.0000 | 50.0000 | 95.9799 | 4 | 1 | 4 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 91.2281 | 96.2963 | 86.6667 | 97.1936 | 26 | 1 | 26 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 89.6552 | 92.8571 | 86.6667 | 97.2653 | 26 | 2 | 26 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | homalt | 99.5720 | 99.4863 | 99.6578 | 81.5178 | 1162 | 6 | 1165 | 4 | 4 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.3494 | 96.6507 | 98.0583 | 76.7494 | 202 | 7 | 202 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.4359 | 100.0000 | 95.0000 | 83.9034 | 74 | 0 | 76 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.7177 | 59.5238 | 87.0968 | 98.6964 | 25 | 17 | 27 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 87.7870 | 78.7671 | 99.1398 | 19.4107 | 460 | 124 | 461 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | homalt | 75.0000 | 69.2308 | 81.8182 | 89.0000 | 18 | 8 | 18 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | * | 43.0769 | 31.8182 | 66.6667 | 94.2308 | 7 | 15 | 8 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | * | 43.0769 | 31.8182 | 66.6667 | 94.3396 | 7 | 15 | 8 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.2551 | 87.6404 | 95.1807 | 72.6974 | 78 | 11 | 79 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 33.3333 | 0.0000 | 96.8000 | 1 | 2 | 0 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.5070 | 81.0811 | 88.2353 | 75.7143 | 30 | 7 | 30 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l100_m0_e0 | * | 57.1429 | 54.5455 | 60.0000 | 86.1111 | 6 | 5 | 6 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | * | 53.8462 | 46.6667 | 63.6364 | 89.7196 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | * | 53.8462 | 46.6667 | 63.6364 | 91.6031 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | * | 53.8462 | 46.6667 | 63.6364 | 91.7293 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | het | 59.3258 | 42.7184 | 97.0588 | 85.5779 | 132 | 177 | 132 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e1 | het | 59.5186 | 42.9022 | 97.1429 | 85.6704 | 136 | 181 | 136 | 4 | 2 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | * | 49.3151 | 33.9623 | 90.0000 | 92.9701 | 36 | 70 | 36 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | * | 50.9554 | 35.3982 | 90.9091 | 94.0860 | 40 | 73 | 40 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | * | 51.5723 | 35.9649 | 91.1111 | 94.1710 | 41 | 73 | 41 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.8979 | 92.3913 | 95.4545 | 69.5502 | 85 | 7 | 84 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m0_e0 | * | 57.9710 | 45.4545 | 80.0000 | 87.8049 | 15 | 18 | 16 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | * | 42.8571 | 33.3333 | 60.0000 | 89.0110 | 5 | 10 | 6 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m1_e0 | homalt | 59.2593 | 53.3333 | 66.6667 | 87.7551 | 8 | 7 | 8 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e0 | homalt | 59.2593 | 53.3333 | 66.6667 | 89.1892 | 8 | 7 | 8 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l125_m2_e1 | homalt | 59.2593 | 53.3333 | 66.6667 | 89.7436 | 8 | 7 | 8 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | * | 62.3288 | 52.0000 | 77.7778 | 89.1566 | 13 | 12 | 14 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | * | 62.3288 | 52.0000 | 77.7778 | 90.8629 | 13 | 12 | 14 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.9381 | 97.9340 | 99.9631 | 55.1737 | 10855 | 229 | 10848 | 4 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 60.0000 | 60.0000 | 97.1510 | 6 | 4 | 6 | 4 | 1 | 25.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 75.0000 | 100.0000 | 60.0000 | 96.7427 | 6 | 0 | 6 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | * | 94.0476 | 92.9412 | 95.1807 | 40.7143 | 79 | 6 | 79 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | ti | tech_badpromoters | homalt | 95.3488 | 100.0000 | 91.1111 | 40.0000 | 41 | 0 | 41 | 4 | 4 | 100.0000 | |
| mlin-fermikit | SNP | tv | tech_badpromoters | * | 93.7063 | 93.0556 | 94.3662 | 43.6508 | 67 | 5 | 67 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | C16_PLUS | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 85.1852 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 84.0000 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 88.5714 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 89.4737 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 89.4737 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 89.4737 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 86.6667 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 96.4602 | 95.9986 | 0 | 0 | 109 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 96.4602 | 89.1137 | 0 | 0 | 109 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | hetalt | 77.7778 | 100.0000 | 63.6364 | 86.7470 | 1 | 0 | 7 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 75.0000 | 94.7541 | 0 | 0 | 12 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 71.4286 | 93.9130 | 0 | 0 | 10 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 71.4286 | 94.7368 | 0 | 0 | 10 | 4 | 0 | 0.0000 | |