PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54551-54600 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | homalt | 96.5217 | 95.6897 | 97.3684 | 95.6322 | 111 | 5 | 111 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2077 | 99.0991 | 99.3166 | 75.7056 | 440 | 4 | 436 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 87.1859 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.4903 | 97.8659 | 99.1228 | 38.1555 | 321 | 7 | 339 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 71.6889 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0583 | 99.0196 | 97.1154 | 63.8889 | 101 | 1 | 101 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 92.8571 | 96.2963 | 89.6552 | 96.7885 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 97.1138 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 97.3464 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 97.3973 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8372 | 98.8372 | 98.8372 | 63.5593 | 255 | 3 | 255 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8120 | 99.9059 | 99.7183 | 81.3713 | 1062 | 1 | 1062 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.1559 | 97.0803 | 99.2556 | 71.3982 | 399 | 12 | 400 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.1916 | 98.5934 | 99.7970 | 32.9401 | 1472 | 21 | 1475 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8773 | 99.8283 | 99.9264 | 44.0264 | 4070 | 7 | 4073 | 3 | 1 | 33.3333 | |
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 64.9289 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D1_5 | segdup | het | 99.4942 | 99.4220 | 99.5665 | 95.0932 | 688 | 4 | 689 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2332 | 96.8504 | 97.6190 | 79.0698 | 123 | 4 | 123 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6017 | 99.5025 | 99.7012 | 65.7688 | 1000 | 5 | 1001 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6526 | 99.6524 | 99.6528 | 63.6057 | 860 | 3 | 861 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.8053 | 92.9825 | 94.6429 | 99.4760 | 53 | 4 | 53 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 83.7989 | 78.9474 | 89.2857 | 81.8182 | 15 | 4 | 25 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9122 | 68.7259 | 98.3516 | 52.7273 | 178 | 81 | 179 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.7339 | 69.2913 | 96.7033 | 44.5122 | 88 | 39 | 88 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | * | 22.8571 | 14.2857 | 57.1429 | 94.9640 | 4 | 24 | 4 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | het | 16.6667 | 10.5263 | 40.0000 | 95.2381 | 2 | 17 | 2 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 72.7273 | 100.0000 | 57.1429 | 99.9868 | 1 | 0 | 4 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 72.7273 | 100.0000 | 57.1429 | 99.7676 | 1 | 0 | 4 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 91.8919 | 86.2944 | 98.2659 | 34.2205 | 170 | 27 | 170 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.2482 | 95.2381 | 99.3450 | 30.3951 | 440 | 22 | 455 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 77.8589 | 68.0851 | 90.9091 | 88.5813 | 32 | 15 | 30 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 77.0186 | 66.6667 | 91.1765 | 89.5706 | 32 | 16 | 31 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1930 | 66.6667 | 91.6667 | 89.2216 | 34 | 17 | 33 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.3650 | 64.1026 | 91.4286 | 63.5417 | 25 | 14 | 32 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 60.4255 | 44.0994 | 95.9459 | 40.8000 | 71 | 90 | 71 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.3906 | 75.6757 | 92.8571 | 77.4194 | 28 | 9 | 39 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 95.7409 | 92.2945 | 99.4545 | 25.2717 | 539 | 45 | 547 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 67.5729 | 51.2864 | 99.0164 | 50.3257 | 299 | 284 | 302 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.9173 | 71.6981 | 92.8571 | 63.4783 | 38 | 15 | 39 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 62.4562 | 45.8781 | 97.7941 | 50.0000 | 128 | 151 | 133 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 84.5899 | 76.6667 | 94.3396 | 70.0565 | 46 | 14 | 50 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.1516 | 93.6330 | 98.8095 | 54.5946 | 250 | 17 | 249 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | homalt | 74.4048 | 60.0962 | 97.6562 | 75.2418 | 125 | 83 | 125 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | * | 79.8464 | 67.0968 | 98.5782 | 90.1356 | 208 | 102 | 208 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_siren | hetalt | 85.4934 | 76.7857 | 96.4286 | 82.2410 | 86 | 26 | 81 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 83.1081 | 75.0000 | 93.1818 | 44.3038 | 39 | 13 | 41 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5140 | 99.3932 | 99.6350 | 71.6258 | 819 | 5 | 819 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3051 | 100.0000 | 96.6667 | 85.6688 | 87 | 0 | 87 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1793 | 97.2561 | 99.1202 | 37.6600 | 319 | 9 | 338 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0288 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |