PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54351-54400 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1507 | 90.6667 | 95.7746 | 59.6591 | 68 | 7 | 68 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | * | 99.6373 | 99.5467 | 99.7280 | 94.0940 | 1098 | 5 | 1100 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.8776 | 90.5512 | 97.4576 | 75.5694 | 115 | 12 | 115 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4779 | 99.3048 | 99.6516 | 61.8182 | 857 | 6 | 858 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.8539 | 98.1508 | 99.5671 | 42.1053 | 690 | 13 | 690 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.7807 | 89.4737 | 96.3415 | 89.6985 | 85 | 10 | 79 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 91.7647 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.0000 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 92.7659 | 88.7218 | 97.1963 | 86.4213 | 118 | 15 | 104 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.8996 | 97.6190 | 98.1818 | 75.6637 | 164 | 4 | 162 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | * | 95.9267 | 95.3488 | 96.5116 | 89.3696 | 82 | 4 | 83 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8453 | 100.0000 | 99.6910 | 63.9569 | 968 | 0 | 968 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.9443 | 98.1905 | 99.7099 | 59.8758 | 1031 | 19 | 1031 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | homalt | 99.3237 | 99.2278 | 99.4197 | 79.1700 | 514 | 4 | 514 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3402 | 99.2467 | 99.4340 | 80.8110 | 527 | 4 | 527 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3513 | 99.2593 | 99.4434 | 80.9339 | 536 | 4 | 536 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | map_siren | homalt | 99.6286 | 99.5050 | 99.7525 | 77.1148 | 1206 | 6 | 1209 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | segdup | homalt | 99.4720 | 99.5772 | 99.3671 | 92.4798 | 471 | 2 | 471 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.5294 | 89.3258 | 98.1481 | 70.3839 | 159 | 19 | 159 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.0012 | 96.8927 | 99.1354 | 68.0773 | 343 | 11 | 344 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.3957 | 100.0000 | 96.8421 | 68.8525 | 92 | 0 | 92 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | * | 94.1176 | 91.2281 | 97.1963 | 82.9346 | 104 | 10 | 104 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | * | 94.2222 | 91.3793 | 97.2477 | 84.0176 | 106 | 10 | 106 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | * | 94.2222 | 91.3793 | 97.2477 | 84.4063 | 106 | 10 | 106 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.8446 | 80.7971 | 98.6726 | 90.8055 | 223 | 53 | 223 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7826 | 99.6424 | 99.9232 | 75.5082 | 3901 | 14 | 3901 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8483 | 99.7230 | 99.9740 | 62.7618 | 11520 | 32 | 11520 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8483 | 99.7230 | 99.9740 | 62.7618 | 11520 | 32 | 11520 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.3834 | 96.8782 | 99.9360 | 67.6999 | 4686 | 151 | 4686 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7906 | 99.6556 | 99.9260 | 45.0901 | 4051 | 14 | 4051 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | ti | segdup | homalt | 99.9134 | 99.8668 | 99.9600 | 87.2078 | 7495 | 10 | 7495 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | HG002compoundhet | homalt | 99.8228 | 99.7344 | 99.9113 | 42.6999 | 3379 | 9 | 3380 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.1576 | 94.7581 | 99.6819 | 66.9239 | 940 | 52 | 940 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9306 | 99.8911 | 99.9703 | 61.3700 | 10086 | 11 | 10086 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.4737 | 82.4242 | 97.8417 | 90.5954 | 136 | 29 | 136 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.6608 | 99.5482 | 99.7736 | 73.0800 | 1322 | 6 | 1322 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | homalt | 98.1818 | 97.9275 | 98.4375 | 91.2528 | 189 | 4 | 189 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | func_cds | * | 98.8729 | 98.4270 | 99.3228 | 93.2232 | 438 | 7 | 440 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 82.0513 | 80.0000 | 84.2105 | 99.9474 | 16 | 4 | 16 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 84.6154 | 91.6667 | 78.5714 | 99.2269 | 11 | 1 | 11 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4127 | 97.2715 | 99.5810 | 71.6772 | 713 | 20 | 713 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.3692 | 98.9653 | 99.7765 | 72.8230 | 1339 | 14 | 1339 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | hetalt | 92.8270 | 88.7097 | 97.3451 | 88.4694 | 110 | 14 | 110 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | hetalt | 92.8870 | 88.8000 | 97.3684 | 89.1841 | 111 | 14 | 111 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e1 | hetalt | 92.8571 | 88.6364 | 97.5000 | 88.9807 | 117 | 15 | 117 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | hetalt | 95.1220 | 97.5000 | 92.8571 | 93.4783 | 39 | 1 | 39 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | hetalt | 95.3488 | 97.6190 | 93.1818 | 93.9643 | 41 | 1 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | hetalt | 94.2529 | 95.3488 | 93.1818 | 94.1411 | 41 | 2 | 41 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 94.7596 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | homalt | 97.3913 | 97.3913 | 97.3913 | 95.1963 | 112 | 3 | 112 | 3 | 2 | 66.6667 | |