PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54301-54350 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I1_5 | map_siren | hetalt | 95.4545 | 93.7500 | 97.2222 | 89.4325 | 105 | 7 | 105 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.2883 | 83.0508 | 94.2308 | 77.3913 | 49 | 10 | 49 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.7062 | 96.6942 | 98.7395 | 67.2176 | 234 | 8 | 235 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.5410 | 97.5410 | 97.5410 | 68.6375 | 119 | 3 | 119 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m1_e0 | * | 93.1507 | 89.4737 | 97.1429 | 84.5133 | 102 | 12 | 102 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | * | 93.2735 | 89.6552 | 97.1963 | 85.5014 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e1 | * | 93.2735 | 89.6552 | 97.1963 | 85.8466 | 104 | 12 | 104 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m1_e0 | * | 88.0000 | 83.0189 | 93.6170 | 89.3905 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e0 | * | 88.0000 | 83.0189 | 93.6170 | 90.5242 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l125_m2_e1 | * | 88.0000 | 83.0189 | 93.6170 | 90.8382 | 44 | 9 | 44 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8581 | 99.7937 | 99.9225 | 58.9725 | 3870 | 8 | 3870 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.9198 | 99.9599 | 99.8798 | 58.8255 | 2493 | 1 | 2493 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4201 | 99.1588 | 99.6829 | 84.8446 | 943 | 8 | 943 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7185 | 99.5147 | 99.9231 | 80.8305 | 3896 | 19 | 3898 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.9241 | 99.9133 | 99.9349 | 33.6595 | 4612 | 4 | 4607 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | hetalt | 91.4286 | 100.0000 | 84.2105 | 84.6774 | 16 | 0 | 16 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | hetalt | 96.4706 | 100.0000 | 93.1818 | 83.5821 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 85.0993 | 42 | 0 | 42 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | hetalt | 96.6292 | 100.0000 | 93.4783 | 84.9673 | 43 | 0 | 43 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 88.4615 | 9 | 0 | 9 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 84.5794 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e0 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.5854 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m2_e1 | hetalt | 95.2381 | 100.0000 | 90.9091 | 86.6397 | 30 | 0 | 30 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m1_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 87.1508 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e0 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.7255 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l150_m2_e1 | hetalt | 93.0233 | 100.0000 | 86.9565 | 88.8889 | 20 | 0 | 20 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_siren | hetalt | 98.1818 | 100.0000 | 96.4286 | 79.8561 | 81 | 0 | 81 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | HG002complexvar | hetalt | 99.0385 | 99.5169 | 98.5646 | 34.6875 | 206 | 1 | 206 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 98.1787 | 97.7376 | 98.6239 | 91.0177 | 216 | 5 | 215 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.3309 | 96.7105 | 97.9592 | 91.2343 | 147 | 5 | 144 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9282 | 99.9043 | 99.9521 | 44.5722 | 6262 | 6 | 6262 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9262 | 99.9262 | 99.9262 | 45.5021 | 4062 | 3 | 4062 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9248 | 99.9248 | 99.9248 | 37.2719 | 3984 | 3 | 3984 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8976 | 99.8720 | 99.9231 | 28.9976 | 3901 | 5 | 3900 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D16_PLUS | * | hetalt | 96.3126 | 93.0160 | 99.8515 | 37.8079 | 1798 | 135 | 2017 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002complexvar | hetalt | 96.3423 | 93.5223 | 99.3377 | 47.4478 | 231 | 16 | 450 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.2917 | 89.4359 | 99.7050 | 39.9291 | 872 | 103 | 1014 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.3087 | 93.0088 | 99.8513 | 37.7661 | 1796 | 135 | 2014 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3917 | 99.1505 | 99.6341 | 69.2077 | 817 | 7 | 817 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.3087 | 93.0088 | 99.8513 | 37.7661 | 1796 | 135 | 2014 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.3133 | 95.5112 | 99.1848 | 77.7374 | 383 | 18 | 365 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l100_m0_e0 | het | 86.7624 | 89.4737 | 84.2105 | 95.1157 | 17 | 2 | 16 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m1_e0 | * | 92.8571 | 96.2963 | 89.6552 | 94.5386 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.3451 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 95.4474 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 94.7853 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.1531 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 95.2141 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6927 | 99.4604 | 99.9261 | 41.2641 | 4055 | 22 | 4058 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4728 | 99.0810 | 99.8678 | 43.7004 | 2264 | 21 | 2267 | 3 | 0 | 0.0000 | |