PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53451-53500 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.8273 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 95.9270 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.5145 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.7965 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 95.8785 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | * | 95.7265 | 96.5517 | 94.9153 | 95.4334 | 56 | 2 | 56 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | het | 95.8904 | 100.0000 | 92.1053 | 95.6867 | 37 | 0 | 35 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.2713 | 96.9816 | 99.5957 | 64.0330 | 739 | 23 | 739 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3759 | 97.4713 | 99.2974 | 66.0032 | 424 | 11 | 424 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 93.9879 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e0 | homalt | 97.3913 | 97.3913 | 97.3913 | 94.5523 | 112 | 3 | 112 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 94.6445 | 113 | 3 | 113 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | * | hetalt | 96.6724 | 93.6886 | 99.8525 | 38.6610 | 1811 | 122 | 2031 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002complexvar | hetalt | 96.7722 | 94.3320 | 99.3421 | 47.8261 | 233 | 14 | 453 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | HG002compoundhet | homalt | 84.2105 | 100.0000 | 72.7273 | 75.5556 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.5197 | 89.8462 | 99.7062 | 40.7085 | 876 | 99 | 1018 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.6688 | 93.6820 | 99.8523 | 38.6219 | 1809 | 122 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6608 | 97.0930 | 98.2353 | 79.4686 | 167 | 5 | 167 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4934 | 99.5943 | 99.3927 | 55.2131 | 491 | 2 | 491 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.6688 | 93.6820 | 99.8523 | 38.6219 | 1809 | 122 | 2028 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 97.6378 | 97.6378 | 97.6378 | 48.9960 | 124 | 3 | 124 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6301 | 97.6017 | 99.6805 | 67.8645 | 936 | 23 | 936 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.4127 | 98.7261 | 98.1013 | 62.9977 | 155 | 2 | 155 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.5207 | 100.0000 | 95.1613 | 75.2000 | 61 | 0 | 59 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 89.6047 | 94.7368 | 85.0000 | 95.1338 | 18 | 1 | 17 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 66.6667 | 80.0000 | 57.1429 | 95.0355 | 4 | 1 | 4 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 93.0233 | 100.0000 | 86.9565 | 94.1476 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 93.0233 | 100.0000 | 86.9565 | 95.0324 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 93.0233 | 100.0000 | 86.9565 | 95.1782 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 90.9091 | 100.0000 | 83.3333 | 94.8571 | 15 | 0 | 15 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 91.4286 | 100.0000 | 84.2105 | 93.5811 | 16 | 0 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 91.4286 | 100.0000 | 84.2105 | 93.6877 | 16 | 0 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4468 | 99.0921 | 99.8040 | 75.9768 | 1528 | 14 | 1528 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2923 | 98.9154 | 99.6721 | 75.2903 | 912 | 10 | 912 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6310 | 99.3377 | 99.9260 | 40.6323 | 4050 | 27 | 4053 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3623 | 98.8621 | 99.8675 | 43.6567 | 2259 | 26 | 2262 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.8776 | 92.0000 | 95.8333 | 60.4396 | 69 | 6 | 69 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m0_e0 | het | 97.2469 | 96.0396 | 98.4848 | 87.4206 | 194 | 8 | 195 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | * | hetalt | 97.0865 | 94.3724 | 99.9614 | 34.0075 | 7714 | 460 | 7763 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.0437 | 94.2921 | 99.9608 | 30.2580 | 7599 | 460 | 7647 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.0437 | 94.2921 | 99.9608 | 30.2580 | 7599 | 460 | 7647 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3905 | 98.9595 | 99.8252 | 33.0994 | 1712 | 18 | 1713 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.9986 | 98.4353 | 99.5683 | 42.5145 | 692 | 11 | 692 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m0_e0 | * | 97.0874 | 97.0874 | 97.0874 | 86.4652 | 100 | 3 | 100 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m0_e0 | het | 96.7213 | 98.3333 | 95.1613 | 86.8085 | 59 | 1 | 59 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002complexvar | hetalt | 96.9799 | 94.9254 | 99.1254 | 69.6996 | 318 | 17 | 340 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | HG002compoundhet | het | 88.6756 | 89.3617 | 88.0000 | 93.8725 | 42 | 5 | 22 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.9412 | 91.5789 | 96.4286 | 90.0119 | 87 | 8 | 81 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 92.1127 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 92.7273 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |