PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53201-53250 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4706 | 100.0000 | 93.1818 | 85.4305 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 86.2745 | 84.6154 | 88.0000 | 94.3311 | 22 | 4 | 22 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 86.2745 | 84.6154 | 88.0000 | 94.3694 | 22 | 4 | 22 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 96.7731 | 93.7729 | 99.9716 | 58.2211 | 10481 | 696 | 10542 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0633 | 94.3415 | 99.9468 | 62.9123 | 5602 | 336 | 5641 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4849 | 99.1930 | 99.7786 | 75.9411 | 1352 | 11 | 1352 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5258 | 99.2722 | 99.7807 | 70.9677 | 1364 | 10 | 1365 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 90.2256 | 88.2353 | 92.3077 | 92.7509 | 45 | 6 | 36 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 83.9945 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.5434 | 100.0000 | 99.0909 | 81.7780 | 327 | 0 | 327 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.5620 | 100.0000 | 99.1279 | 83.2522 | 341 | 0 | 341 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.5317 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 98.0057 | 97.7273 | 98.2857 | 90.7846 | 172 | 4 | 172 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 85.5603 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 87.3449 | 201 | 0 | 201 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 99.2701 | 100.0000 | 98.5507 | 87.4469 | 204 | 0 | 204 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 96.6825 | 96.2264 | 97.1429 | 95.3146 | 102 | 4 | 102 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 96.8889 | 96.4602 | 97.3214 | 95.7656 | 109 | 4 | 109 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 96.9163 | 96.4912 | 97.3451 | 95.8684 | 110 | 4 | 110 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | segdup | het | 99.3483 | 99.2565 | 99.4403 | 94.7265 | 534 | 4 | 533 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | HG002compoundhet | hetalt | 97.1767 | 94.5414 | 99.9630 | 28.7734 | 8071 | 466 | 8109 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 92.5816 | 87.6404 | 98.1132 | 68.5149 | 156 | 22 | 156 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 65.1786 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 81.2500 | 0 | 0 | 0 | 3 | 3 | 100.0000 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3103 | 100.0000 | 98.6301 | 65.2381 | 216 | 0 | 216 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0583 | 99.0196 | 97.1154 | 64.1379 | 101 | 1 | 101 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 89.6047 | 94.7368 | 85.0000 | 97.3510 | 18 | 1 | 17 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.7368 | 100.0000 | 90.0000 | 97.4555 | 27 | 0 | 27 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 93.1034 | 96.4286 | 90.0000 | 97.5124 | 27 | 1 | 27 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.7833 | 99.8915 | 99.6753 | 78.2895 | 921 | 1 | 921 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.0580 | 91.2409 | 99.2084 | 70.4829 | 375 | 36 | 376 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2315 | 96.7180 | 99.7931 | 31.3447 | 1444 | 49 | 1447 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9899 | 99.4924 | 98.4925 | 60.5941 | 196 | 1 | 196 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8250 | 99.7812 | 99.8688 | 48.1162 | 2280 | 5 | 2283 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.0619 | 99.2481 | 98.8764 | 82.8296 | 264 | 2 | 264 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 90.9091 | 87.7193 | 94.3396 | 99.4917 | 50 | 7 | 50 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.9957 | 96.5812 | 97.4138 | 92.7318 | 113 | 4 | 113 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.1240 | 96.8750 | 95.3846 | 94.3674 | 62 | 2 | 62 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.8000 | 96.0317 | 97.5806 | 92.9785 | 121 | 5 | 121 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 95.7746 | 95.7746 | 95.7746 | 94.4876 | 68 | 3 | 68 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 96.4427 | 95.3125 | 97.6000 | 93.0748 | 122 | 6 | 122 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 95.7746 | 95.7746 | 95.7746 | 94.6049 | 68 | 3 | 68 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | HG002complexvar | hetalt | 95.8690 | 92.8358 | 99.1071 | 67.4419 | 311 | 24 | 333 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.1071 | 92.9674 | 99.4662 | 64.2038 | 542 | 41 | 559 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.2617 | 95.3704 | 97.1698 | 89.5257 | 103 | 5 | 103 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 40.0000 | 100.0000 | 25.0000 | 93.6508 | 1 | 0 | 1 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.7471 | 93.6170 | 93.8776 | 80.9339 | 44 | 3 | 46 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4380 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4520 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 95.4604 | 91.3394 | 99.9708 | 56.0929 | 10209 | 968 | 10266 | 3 | 3 | 100.0000 | |