PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52701-52750 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| ciseli-custom | INDEL | I16_PLUS | map_l100_m1_e0 | * | 6.6667 | 3.8462 | 25.0000 | 96.4602 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e0 | * | 6.6667 | 3.8462 | 25.0000 | 97.0149 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I16_PLUS | map_l100_m2_e1 | * | 6.6667 | 3.8462 | 25.0000 | 97.1223 | 1 | 25 | 1 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 8.0000 | 0.0000 | 94.3396 | 2 | 23 | 0 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | homalt | 28.5714 | 22.2222 | 40.0000 | 97.6526 | 2 | 7 | 2 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 22.6415 | 13.6364 | 66.6667 | 97.8774 | 6 | 38 | 6 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 25.4545 | 15.5556 | 70.0000 | 98.0198 | 7 | 38 | 7 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 28.0702 | 17.3913 | 72.7273 | 97.8887 | 8 | 38 | 8 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | I6_15 | func_cds | homalt | 61.5385 | 53.3333 | 72.7273 | 21.4286 | 8 | 7 | 8 | 3 | 3 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 24.3902 | 15.1515 | 62.5000 | 94.2446 | 5 | 28 | 5 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 25.0000 | 15.0943 | 72.7273 | 94.2105 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 25.0000 | 15.0943 | 72.7273 | 95.2586 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 25.0000 | 15.0943 | 72.7273 | 95.2991 | 8 | 45 | 8 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | HG002compoundhet | hetalt | 99.9219 | 99.8840 | 99.9599 | 21.9998 | 861 | 1 | 7478 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 84.2105 | 94.1538 | 0 | 0 | 16 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.6508 | 100.0000 | 99.3039 | 77.5052 | 13 | 0 | 428 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 62.5000 | 93.5484 | 0 | 0 | 5 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 25.0000 | 99.9765 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 25.0000 | 99.9194 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 40.0000 | 95.5357 | 0 | 0 | 2 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.9231 | 100.0000 | 62.5000 | 97.5904 | 7 | 0 | 5 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 81.2500 | 93.8697 | 0 | 0 | 13 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.0228 | 100.0000 | 98.0645 | 81.3926 | 6 | 0 | 152 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 57.1429 | 92.0455 | 0 | 0 | 4 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 40.0000 | 95.0495 | 0 | 0 | 2 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | tv | HG002compoundhet | hetalt | 99.9052 | 99.8840 | 99.9265 | 25.0046 | 861 | 1 | 4079 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5100 | 99.6190 | 99.4012 | 66.6667 | 523 | 2 | 498 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 72.2222 | 65.0000 | 81.2500 | 99.5143 | 13 | 7 | 13 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 40.0000 | 40.0000 | 40.0000 | 99.5802 | 2 | 3 | 2 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 75.0000 | 70.5882 | 80.0000 | 99.5336 | 12 | 5 | 12 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 44.4444 | 50.0000 | 40.0000 | 99.5759 | 2 | 2 | 2 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 92.3823 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_siren | hetalt | 81.9967 | 71.2551 | 96.5517 | 92.6020 | 176 | 71 | 84 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | C6_15 | * | * | 84.2105 | 100.0000 | 72.7273 | 98.3257 | 7 | 0 | 8 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | HG002complexvar | * | 76.9231 | 100.0000 | 62.5000 | 96.4912 | 4 | 0 | 5 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 99.0228 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 98.6486 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 99.0228 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | * | hetalt | 86.0203 | 76.2545 | 98.6547 | 50.8811 | 1474 | 459 | 220 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.0000 | 76.2299 | 98.6425 | 50.7795 | 1472 | 459 | 218 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 40.1003 | 26.3158 | 84.2105 | 99.8551 | 15 | 42 | 16 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 36.3636 | 23.8095 | 76.9231 | 99.8504 | 10 | 32 | 10 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.2447 | 68.7055 | 99.3827 | 61.1200 | 483 | 220 | 483 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | * | 76.5957 | 62.7907 | 98.1818 | 93.8133 | 162 | 96 | 162 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m1_e0 | het | 80.0000 | 68.2540 | 96.6292 | 95.5366 | 86 | 40 | 86 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e0 | * | 76.1021 | 62.1212 | 98.2036 | 94.2215 | 164 | 100 | 164 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e0 | het | 78.7330 | 66.4122 | 96.6667 | 95.8640 | 87 | 44 | 87 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D6_15 | segdup | * | 87.8562 | 79.5812 | 98.0519 | 96.2676 | 152 | 39 | 151 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I16_PLUS | HG002complexvar | hetalt | 77.0889 | 63.2836 | 98.5981 | 68.1548 | 212 | 123 | 211 | 3 | 3 | 100.0000 | |