PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52351-52400 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.7974 | 97.3684 | 98.2301 | 84.0395 | 111 | 3 | 111 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m1_e0 | homalt | 98.6094 | 97.8593 | 99.3711 | 81.7451 | 320 | 7 | 316 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e0 | homalt | 98.6662 | 97.9472 | 99.3958 | 83.2320 | 334 | 7 | 329 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 98.6740 | 97.9592 | 99.3994 | 83.4739 | 336 | 7 | 331 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4720 | 97.9798 | 98.9691 | 85.4899 | 194 | 4 | 192 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.4949 | 98.0100 | 98.9848 | 87.2244 | 197 | 4 | 195 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5173 | 98.0392 | 99.0000 | 87.3658 | 200 | 4 | 198 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 91.4851 | 91.6667 | 91.3043 | 97.8281 | 22 | 2 | 21 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 86.1878 | 86.6667 | 85.7143 | 98.1912 | 13 | 2 | 12 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 96.5775 | 97.7273 | 95.4545 | 93.6232 | 43 | 1 | 42 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 96.6539 | 97.7778 | 95.5556 | 94.5055 | 44 | 1 | 43 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 96.7269 | 97.8261 | 95.6522 | 94.5691 | 45 | 1 | 44 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | segdup | het | 99.1750 | 98.6989 | 99.6558 | 95.3303 | 531 | 7 | 579 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.7598 | 91.0112 | 98.8304 | 71.4047 | 162 | 16 | 169 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.4061 | 98.0645 | 98.7500 | 82.6464 | 152 | 3 | 158 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 88.7845 | 84.8485 | 93.1034 | 92.0330 | 28 | 5 | 27 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 82.2134 | 76.4706 | 88.8889 | 93.3824 | 13 | 4 | 16 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m1_e0 | * | 92.1176 | 88.6792 | 95.8333 | 91.2727 | 47 | 6 | 46 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 88.3191 | 83.3333 | 93.9394 | 91.8919 | 25 | 5 | 31 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | * | 92.1176 | 88.6792 | 95.8333 | 92.3323 | 47 | 6 | 46 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 88.3191 | 83.3333 | 93.9394 | 92.8726 | 25 | 5 | 31 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e1 | * | 92.1176 | 88.6792 | 95.8333 | 92.5466 | 47 | 6 | 46 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l125_m2_e1 | het | 88.3191 | 83.3333 | 93.9394 | 93.0672 | 25 | 5 | 31 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | map_siren | homalt | 97.7778 | 97.7778 | 97.7778 | 81.3278 | 88 | 2 | 88 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | * | map_l100_m1_e0 | homalt | 98.7154 | 97.4707 | 99.9924 | 55.8509 | 26320 | 683 | 26310 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | * | map_l100_m2_e0 | homalt | 98.7307 | 97.5003 | 99.9925 | 58.6733 | 26835 | 688 | 26824 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | * | map_l100_m2_e1 | homalt | 98.7359 | 97.5104 | 99.9926 | 58.6714 | 27104 | 692 | 27093 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l100_m1_e0 | homalt | 98.6915 | 97.4276 | 99.9886 | 54.9898 | 17498 | 462 | 17493 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l100_m2_e0 | homalt | 98.7027 | 97.4493 | 99.9888 | 57.8553 | 17842 | 467 | 17837 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l100_m2_e1 | homalt | 98.7103 | 97.4640 | 99.9889 | 57.8502 | 18025 | 469 | 18020 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8760 | 99.7722 | 99.9801 | 53.5072 | 10074 | 23 | 10033 | 2 | 1 | 50.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7596 | 99.5574 | 99.9627 | 68.6053 | 5399 | 24 | 5353 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7596 | 99.5574 | 99.9627 | 68.6053 | 5399 | 24 | 5353 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1683 | 75.0000 | 93.3333 | 87.0690 | 27 | 9 | 28 | 2 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | map_siren | homalt | 99.0870 | 98.2019 | 99.9882 | 51.4688 | 16930 | 310 | 16915 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | tv | tech_badpromoters | het | 95.5224 | 96.9697 | 94.1176 | 64.2105 | 32 | 1 | 32 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 72.7273 | 66.6667 | 80.0000 | 99.6003 | 8 | 4 | 8 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 80.0000 | 80.0000 | 80.0000 | 99.5795 | 8 | 2 | 8 | 2 | 1 | 50.0000 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.9899 | 0 | 3 | 0 | 2 | 1 | 50.0000 | ||
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 97.1014 | 0 | 1 | 0 | 2 | 1 | 50.0000 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 33.3333 | 97.6378 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 33.3333 | 96.5909 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 33.3333 | 97.0874 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 93.5484 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 33.3333 | 96.8085 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 94.8276 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6333 | 99.5812 | 99.6855 | 77.3934 | 951 | 4 | 951 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6636 | 99.8179 | 99.5098 | 78.3746 | 548 | 1 | 609 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2714 | 98.9362 | 99.6089 | 56.7644 | 465 | 5 | 764 | 3 | 2 | 66.6667 | |