PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52201-52250 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 100.0000 | 97.0588 | 87.9646 | 67 | 0 | 66 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m0_e0 | het | 90.3226 | 93.3333 | 87.5000 | 98.2721 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.2845 | 95.5466 | 99.0868 | 80.4290 | 236 | 11 | 217 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0437 | 91.5730 | 98.7879 | 71.6007 | 163 | 15 | 163 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0079 | 98.5876 | 99.4318 | 70.3953 | 349 | 5 | 350 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.9917 | 98.3416 | 99.6503 | 72.5659 | 593 | 10 | 570 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.8550 | 98.1557 | 99.5643 | 82.0071 | 479 | 9 | 457 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.1287 | 94.5229 | 99.8822 | 39.6374 | 1674 | 97 | 1696 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m1_e0 | het | 96.6102 | 96.6102 | 96.6102 | 89.1144 | 57 | 2 | 57 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e0 | het | 96.7213 | 96.7213 | 96.7213 | 89.9007 | 59 | 2 | 59 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | het | 96.7213 | 96.7213 | 96.7213 | 90.1135 | 59 | 2 | 59 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m1_e0 | het | 93.3333 | 93.3333 | 93.3333 | 92.0000 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e0 | het | 93.3333 | 93.3333 | 93.3333 | 93.0070 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l125_m2_e1 | het | 93.3333 | 93.3333 | 93.3333 | 93.1663 | 28 | 2 | 28 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.0605 | 98.2598 | 99.8745 | 43.2288 | 1581 | 28 | 1591 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9481 | 99.9259 | 99.9703 | 34.6642 | 6740 | 5 | 6740 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | * | tech_badpromoters | * | 98.0769 | 97.4522 | 98.7097 | 43.8406 | 153 | 4 | 153 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.4026 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.8879 | 97.9575 | 99.8361 | 58.2906 | 1199 | 25 | 1218 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9274 | 98.0496 | 99.8211 | 42.1025 | 1106 | 22 | 1116 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.7514 | 97.9730 | 99.5423 | 84.3201 | 435 | 9 | 435 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.9501 | 98.4334 | 99.4723 | 83.2597 | 377 | 6 | 377 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6736 | 99.4668 | 99.8812 | 64.0938 | 1679 | 9 | 1682 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9373 | 99.9248 | 99.9498 | 33.3890 | 3984 | 3 | 3984 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l250_m1_e0 | homalt | 97.6959 | 97.2477 | 98.1481 | 94.2523 | 106 | 3 | 106 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 94.7441 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | homalt | 97.8355 | 97.4138 | 98.2609 | 94.8546 | 113 | 3 | 113 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 98.3051 | 0 | 0 | 0 | 2 | 2 | 100.0000 | ||
| cchapple-custom | INDEL | C16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 97.6190 | 0 | 0 | 0 | 2 | 2 | 100.0000 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 97.4684 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 97.0149 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C1_5 | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 75.0000 | 97.6744 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 66.6667 | 97.8723 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 75.0000 | 97.9434 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 66.6667 | 98.1073 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 75.0000 | 98.0050 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C1_5 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 66.6667 | 98.1595 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 83.3333 | 92.5000 | 0 | 0 | 10 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 77.7778 | 92.8571 | 0 | 0 | 7 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 96.3636 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4644 | 97.8261 | 99.1111 | 60.3873 | 225 | 5 | 223 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.6066 | 75.0000 | 94.4444 | 59.5506 | 6 | 2 | 34 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 11.7647 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 95.2880 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 94.2308 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 96.2025 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 95.0000 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 96.5318 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 80.0000 | 100.0000 | 66.6667 | 95.5556 | 3 | 0 | 4 | 2 | 0 | 0.0000 | |