PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51751-51800 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 87.4751 | 80.0000 | 96.4912 | 84.4687 | 28 | 7 | 55 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.8452 | 98.0861 | 99.6161 | 43.6147 | 410 | 8 | 519 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m1_e0 | * | 93.1123 | 88.5965 | 98.1132 | 89.0383 | 101 | 13 | 104 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.0958 | 88.1356 | 96.4286 | 90.1060 | 52 | 7 | 54 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 93.2365 | 88.7931 | 98.1481 | 89.7045 | 103 | 13 | 106 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.3641 | 88.5246 | 96.5517 | 90.5383 | 54 | 7 | 56 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 93.2442 | 88.7931 | 98.1651 | 89.8793 | 103 | 13 | 107 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.3908 | 88.5246 | 96.6102 | 90.6051 | 54 | 7 | 57 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | SNP | * | map_l100_m1_e0 | homalt | 55.1894 | 38.1143 | 99.9806 | 78.4662 | 10292 | 16711 | 10292 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e0 | homalt | 55.9994 | 38.8911 | 99.9813 | 79.7534 | 10704 | 16819 | 10704 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | map_l100_m2_e1 | homalt | 56.2073 | 39.0920 | 99.9816 | 79.6586 | 10866 | 16930 | 10866 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 49.3506 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.7105 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4277 | 98.8814 | 99.9800 | 49.5688 | 9989 | 113 | 9998 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| asubramanian-gatk | SNP | ti | map_l150_m0_e0 | * | 32.0231 | 19.0688 | 99.8668 | 96.6434 | 1499 | 6362 | 1499 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l150_m0_e0 | het | 34.9037 | 21.1497 | 99.8148 | 97.0413 | 1078 | 4019 | 1078 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | * | decoy | * | 67.7419 | 60.0000 | 77.7778 | 99.9553 | 6 | 4 | 7 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 33.3333 | 85.7143 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 33.3333 | 83.3333 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 90.4762 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| anovak-vg | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 90.4762 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| anovak-vg | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.5124 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.7143 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.7578 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.9487 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 60.0000 | 97.7679 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 50.0000 | 97.9592 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.1591 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.4194 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 60.0000 | 97.3958 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 50.0000 | 97.6471 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 60.0000 | 97.4093 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 50.0000 | 97.6608 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 60.0000 | 99.0619 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C1_5 | segdup | het | 0.0000 | 0.0000 | 60.0000 | 98.8610 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 88.8889 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 81.8182 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 81.8182 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 0.0000 | 86.6667 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 84.6154 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 94.4444 | 1 | 3 | 1 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 25.0000 | 0.0000 | 96.2264 | 1 | 3 | 0 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.1971 | 86.9565 | 89.4737 | 77.1084 | 20 | 3 | 17 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 57.1429 | 46.1538 | 75.0000 | 33.3333 | 6 | 7 | 6 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 62.3377 | 53.3333 | 75.0000 | 92.8571 | 8 | 7 | 6 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 65.2850 | 56.2500 | 77.7778 | 92.5620 | 9 | 7 | 7 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 65.2850 | 56.2500 | 77.7778 | 92.7419 | 9 | 7 | 7 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.1649 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |