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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
51501-51550 / 86044 show all
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
85.3933
77.5510
95.0000
75.6098
38113820
0.0000
ckim-isaacINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
88.8394
80.5907
98.9691
22.4000
1914619221
50.0000
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
96.8657
94.0053
99.9057
45.5875
2117135211921
50.0000
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
97.2553
94.7939
99.8479
50.8778
131172131321
50.0000
ckim-isaacSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
63.4921
48.7805
90.9091
88.2353
20212022
100.0000
ckim-isaacSNP*map_l125_m0_e0homalt
64.1166
47.1990
99.9369
61.5104
31683544316822
100.0000
ckim-isaacSNP*map_l150_m0_e0homalt
62.3254
45.2922
99.8921
68.1060
18522237185222
100.0000
ckim-isaacSNP*map_l250_m1_e0homalt
58.8606
41.7377
99.8058
83.7974
10281435102822
100.0000
ckim-isaacSNP*map_l250_m2_e0homalt
59.1933
42.0700
99.8233
85.8571
11301556113022
100.0000
ckim-isaacSNP*map_l250_m2_e1homalt
59.3225
42.2001
99.8259
85.8515
11471571114722
100.0000
ckim-isaacSNPtifunc_cdshet
99.5275
99.0828
99.9763
20.1440
842678842620
0.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.3541
87.9896
99.4152
75.0910
3374634022
100.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
54.9020
40.0000
87.5000
88.3212
14211422
100.0000
ckim-isaacSNPtimap_l125_m0_e0homalt
65.7804
49.0314
99.9093
59.9855
22022289220222
100.0000
ckim-isaacSNPtimap_l150_m0_e0homalt
64.3926
47.5190
99.8478
66.4710
13121449131222
100.0000
ckim-isaacSNPtimap_l250_m0_e0het
70.8075
54.9251
99.6117
94.7975
51342151320
0.0000
ckim-isaacSNPtimap_l250_m1_e0homalt
61.8884
44.8662
99.7234
82.9922
72188672122
100.0000
ckim-isaacSNPtimap_l250_m2_e0homalt
62.2886
45.2830
99.7481
85.1339
79295779222
100.0000
ckim-isaacSNPtimap_l250_m2_e1homalt
62.4273
45.4289
99.7522
85.0970
80596780522
100.0000
ckim-isaacSNPtvfunc_cds*
99.2280
98.5129
99.9536
23.4678
430665430620
0.0000
ckim-isaacSNPtvfunc_cdshet
99.3184
98.7204
99.9238
24.8927
262334262320
0.0000
ckim-isaacSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.5585
93.7023
99.5943
53.9683
4913349121
50.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
88.3117
82.9268
94.4444
87.1429
3473421
50.0000
ckim-isaacSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
89.9538
82.0896
99.4845
75.5359
3858438622
100.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
94.3567
89.4171
99.8741
46.5320
1580187158621
50.0000
ckim-isaacSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.8461
95.8323
99.9464
57.4072
3725162372722
100.0000
ckim-isaacSNPtvmap_l100_m1_e0homalt
68.8845
52.5489
99.9579
57.4205
47524291475222
100.0000
ckim-isaacSNPtvmap_l100_m2_e0homalt
69.2951
53.0280
99.9591
61.2002
48864328488622
100.0000
ckim-isaacSNPtvmap_l100_m2_e1homalt
69.3075
53.0424
99.9595
61.1858
49344368493422
100.0000
ckim-isaacSNPtvmap_l125_m1_e0homalt
62.9734
45.9727
99.9258
63.6902
26943166269422
100.0000
ckim-isaacSNPtvmap_l125_m2_e0homalt
63.4373
46.4683
99.9285
67.7501
27963221279622
100.0000
ckim-isaacSNPtvmap_l125_m2_e1homalt
63.5067
46.5426
99.9293
67.7423
28273247282722
100.0000
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9064
99.9065
99.9064
76.8906
21362213421
50.0000
ckim-vqsrINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
97.9167
100.0000
95.9184
54.6296
4704722
100.0000
ckim-vqsrINDEL*map_l150_m0_e0homalt
99.0881
99.3902
98.7879
91.7376
163116322
100.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3985
98.9521
99.8489
49.8485
132214132220
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.2357
98.7135
99.7636
51.8223
8441184420
0.0000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.2749
98.6108
99.9480
59.6368
383354384322
100.0000
asubramanian-gatkSNPtvmap_l250_m1_e0*
27.4267
15.9048
99.5272
98.5741
421222642120
0.0000
asubramanian-gatkSNPtvmap_l250_m1_e0het
29.7001
17.4594
99.3631
98.7032
312147531220
0.0000
asubramanian-gatkSNPtvmap_l250_m2_e0*
28.9950
16.9674
99.5927
98.5624
489239348920
0.0000
asubramanian-gatkSNPtvmap_l250_m2_e0het
31.0570
18.4021
99.4429
98.7043
357158335720
0.0000
asubramanian-gatkSNPtvmap_l250_m2_e1*
29.3068
17.1811
99.6024
98.5560
501241550120
0.0000
asubramanian-gatkSNPtvmap_l250_m2_e1het
31.3759
18.6260
99.4565
98.6990
366159936620
0.0000
asubramanian-gatkSNPtvmap_sirenhomalt
67.6949
51.1717
99.9773
68.4987
88228418881922
100.0000
bgallagher-sentieonINDEL*func_cdshet
99.5392
100.0000
99.0826
49.7696
214021620
0.0000
bgallagher-sentieonINDEL*map_l250_m0_e0homalt
94.1176
96.0000
92.3077
97.4206
2412421
50.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7238
100.0000
99.4490
62.9592
361036121
50.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.4427
99.6296
99.2565
62.6389
269126720
0.0000
bgallagher-sentieonINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10*
97.0588
97.0588
97.0588
96.8460
6626620
0.0000