PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
51401-51450 / 86044 show all
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
92.1212
87.3563
97.4359
84.8544
76117622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
50.0000
100.0000
33.3333
95.0820
10122
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
94.9615
90.9091
99.3921
56.0160
3103132722
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
95.2891
91.6084
99.2780
52.0761
2622427522
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
94.9242
90.7895
99.4536
60.9392
3453536422
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.3190
93.1715
99.6865
67.9236
6144563622
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_diTR_11to50hetalt
94.9718
91.0394
99.2593
62.7586
2542526822
100.0000
ckim-vqsrINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
98.1963
97.6190
98.7805
79.4486
164416221
50.0000
ckim-vqsrINDELI16_PLUSmap_l100_m2_e0het
91.8919
94.4444
89.4737
95.6522
1711720
0.0000
ckim-vqsrINDELI16_PLUSmap_l100_m2_e1het
91.8919
94.4444
89.4737
95.6720
1711720
0.0000
ckim-vqsrINDELI16_PLUSmap_l125_m2_e0*
90.3226
93.3333
87.5000
97.2556
1411420
0.0000
ckim-vqsrINDELI16_PLUSmap_l125_m2_e1*
90.3226
93.3333
87.5000
97.2603
1411420
0.0000
ckim-vqsrINDELI16_PLUSmap_siren*
97.0895
96.5116
97.6744
93.2230
8338420
0.0000
ckim-vqsrINDELI16_PLUSmap_sirenhet
95.9184
95.9184
95.9184
92.9900
4724720
0.0000
ckim-vqsrINDELI1_5func_cds*
99.4505
100.0000
98.9071
47.8632
180018120
0.0000
ckim-vqsrINDELI1_5func_cdshet
98.3607
100.0000
96.7742
64.7727
5906020
0.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6764
99.6119
99.7409
78.6563
770377020
0.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7912
100.0000
99.5833
75.9880
478047822
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6855
99.5812
99.7901
80.3667
951495121
50.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1236
92.5759
99.9541
23.6819
4302345435522
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.7868
93.8198
99.9475
22.1700
3780249380722
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0482
92.4350
99.9552
27.1689
4411361446422
100.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1530
92.6221
99.9638
35.0611
5461435552322
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
78.7206
65.5340
98.5507
56.6038
1357113621
50.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8968
100.0000
99.7938
64.2989
968096822
100.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
95.3668
91.8216
99.1968
76.6417
2472224721
50.0000
ckim-vqsrINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2060
267026722
100.0000
ckim-vqsrINDELI1_5map_l125_m0_e0homalt
99.1304
100.0000
98.2759
86.0744
114011421
50.0000
ckim-vqsrINDELI1_5map_l125_m1_e0homalt
99.5420
99.6942
99.3902
83.8741
326132621
50.0000
ckim-vqsrINDELI1_5map_l125_m2_e0homalt
99.5608
99.7067
99.4152
85.0850
340134021
50.0000
ckim-vqsrINDELI1_5map_l125_m2_e1homalt
99.5633
99.7085
99.4186
85.2740
342134221
50.0000
ckim-vqsrINDELI1_5map_l150_m1_e0homalt
99.2443
99.4949
98.9950
87.4921
197119721
50.0000
ckim-vqsrINDELI1_5map_l150_m2_e0homalt
99.2556
99.5025
99.0099
88.8950
200120021
50.0000
ckim-vqsrINDELI1_5map_l150_m2_e1homalt
99.2665
99.5098
99.0244
88.9488
203120321
50.0000
ckim-vqsrINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8593
471247122
100.0000
ckim-vqsrINDELI6_15HG002compoundhethetalt
95.9547
92.2455
99.9747
28.2465
7875662791622
100.0000
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_diTR_51to200*
83.9506
73.9130
97.1429
57.8313
68246821
50.0000
ckim-vqsrINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5392
100.0000
99.0826
67.8940
216021622
100.0000
ckim-vqsrINDELI6_15map_sirenhomalt
98.3425
98.8889
97.8022
85.3462
8918921
50.0000
ckim-vqsrSNP**hetalt
97.4148
95.1780
99.7593
54.6645
8294282922
100.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6927
99.4381
99.9487
76.0337
389322389322
100.0000
ckim-vqsrSNP*tech_badpromoters*
98.4026
98.0892
98.7179
49.0196
154315422
100.0000
ckim-vqsrSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
47.0588
7917922
100.0000
ckim-vqsrSNPti*hetalt
97.3638
95.1890
99.6403
53.2773
5542855422
100.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.7064
96.3801
99.0698
91.1230
213821322
100.0000
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.6744
96.7105
98.6577
91.3873
147514722
100.0000
ckim-vqsrSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.3604
98.8187
99.9081
42.3617
217526217522
100.0000
ckim-vqsrSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.5138
99.1122
99.9186
36.8380
245622245521
50.0000
ckim-vqsrSNPtimap_l125_m1_e0homalt
46.9945
30.7198
99.9411
85.1863
33937652339322
100.0000