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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
51251-51300 / 86044 show all
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7912
100.0000
99.5833
76.0359
478047822
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7906
99.7906
99.7906
80.5736
953295321
50.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
97.0210
94.2544
99.9549
27.4378
4380267443322
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.6126
95.3835
99.9483
25.9281
3843186386922
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.9791
94.1744
99.9560
31.2217
4494278454722
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
97.3638
94.8948
99.9647
39.6673
5595301565622
100.0000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
79.0731
66.0194
98.5612
58.3832
1367013721
50.0000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.8968
100.0000
99.7938
64.2462
968096822
100.0000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
96.5649
94.0520
99.2157
77.2930
2531625321
50.0000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.5423
267026722
100.0000
dgrover-gatkINDELI1_5map_l150_m0_e0homalt
98.5294
100.0000
97.1014
89.2188
6706722
100.0000
dgrover-gatkINDELI1_5map_l250_m1_e0homalt
96.6292
97.7273
95.5556
94.3396
4314322
100.0000
dgrover-gatkINDELI1_5map_l250_m2_e0homalt
96.7033
97.7778
95.6522
95.0749
4414422
100.0000
dgrover-gatkINDELI1_5map_l250_m2_e1homalt
96.7742
97.8261
95.7447
95.1093
4514522
100.0000
dgrover-gatkINDELI1_5segduphomalt
99.5772
99.5772
99.5772
92.8776
471247122
100.0000
dgrover-gatkINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.8406
95.8333
99.9338
44.4975
2990130301922
100.0000
dgrover-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
97.4748
95.1598
99.9052
33.6375
2084106210722
100.0000
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
97.2777
94.8052
99.8826
40.8681
167992170122
100.0000
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_diTR_51to200*
82.5000
71.7391
97.0588
60.2339
66266621
50.0000
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.3506
99.1379
99.5643
72.3494
460445720
0.0000
dgrover-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5392
100.0000
99.0826
68.3599
216021622
100.0000
dgrover-gatkINDELI6_15map_l100_m1_e0*
96.4286
94.7368
98.1818
87.9913
108610821
50.0000
dgrover-gatkINDELI6_15map_l100_m1_e0het
95.7265
94.9153
96.5517
88.7597
5635621
50.0000
dgrover-gatkINDELI6_15map_l100_m2_e0*
96.4912
94.8276
98.2143
88.8000
110611021
50.0000
dgrover-gatkINDELI6_15map_l100_m2_e0het
95.8678
95.0820
96.6667
89.2665
5835821
50.0000
dgrover-gatkINDELI6_15map_l100_m2_e1*
96.4912
94.8276
98.2143
89.0838
110611021
50.0000
dgrover-gatkINDELI6_15map_l100_m2_e1het
95.8678
95.0820
96.6667
89.5105
5835821
50.0000
dgrover-gatkINDELI6_15map_l125_m1_e0*
93.2039
90.5660
96.0000
92.1260
4854821
50.0000
dgrover-gatkINDELI6_15map_l125_m1_e0het
91.5254
90.0000
93.1034
92.3483
2732721
50.0000
dgrover-gatkINDELI6_15map_l125_m2_e0*
93.2039
90.5660
96.0000
92.9379
4854821
50.0000
dgrover-gatkINDELI6_15map_l125_m2_e0het
91.5254
90.0000
93.1034
92.9952
2732721
50.0000
dgrover-gatkINDELI6_15map_l125_m2_e1*
93.2039
90.5660
96.0000
93.1319
4854821
50.0000
dgrover-gatkINDELI6_15map_l125_m2_e1het
91.5254
90.0000
93.1034
93.1442
2732721
50.0000
dgrover-gatkINDELI6_15map_sirenhet
96.7972
95.1049
98.5507
86.9194
136713621
50.0000
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9629
99.9555
99.9703
35.4085
67423674222
100.0000
dgrover-gatkSNP*tech_badpromoters*
98.4026
98.0892
98.7179
49.6774
154315422
100.0000
dgrover-gatkSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
47.4026
7917922
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.9405
96.8326
99.0741
91.2409
214721422
100.0000
dgrover-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
98.0132
97.3684
98.6667
91.5636
148414822
100.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9016
99.9508
45.9204
40614406121
50.0000
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.9457
22001220022
100.0000
dgrover-gatkSNPtimap_l250_m0_e0homalt
98.7283
97.9358
99.5338
91.1982
427942721
50.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8338
99.7050
99.9630
71.6940
540716540722
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3897
38843388422
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.3783
27562275622
100.0000
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
84.4720
80.0000
89.4737
99.9555
1641722
100.0000
egarrison-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
93.3333
100.0000
87.5000
99.3504
1201422
100.0000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
93.6508
89.3939
98.3333
77.6536
1181411821
50.0000
egarrison-hhgaINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
80.0000
75.0000
85.7143
99.8799
1241220
0.0000