PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51151-51200 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I16_PLUS | segdup | * | 95.7890 | 95.7447 | 95.8333 | 93.4426 | 45 | 2 | 46 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | segdup | het | 94.1851 | 95.8333 | 92.5926 | 93.6620 | 23 | 1 | 25 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | func_cds | * | 99.4475 | 100.0000 | 98.9011 | 32.0896 | 180 | 0 | 180 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | func_cds | het | 98.3333 | 100.0000 | 96.7213 | 36.4583 | 59 | 0 | 59 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.8272 | 90.4762 | 97.4359 | 61.7647 | 76 | 8 | 76 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.8326 | 95.5357 | 98.1651 | 71.6883 | 107 | 5 | 107 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.3942 | 97.3988 | 99.4100 | 77.7413 | 337 | 9 | 337 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 86.3234 | 76.6990 | 98.7097 | 39.9225 | 158 | 48 | 153 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.5570 | 77.0950 | 98.6667 | 27.5362 | 138 | 41 | 148 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4743 | 92.1659 | 99.0291 | 42.7778 | 200 | 17 | 204 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 50.0000 | 100.0000 | 33.3333 | 95.5882 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.6217 | 88.0000 | 91.3043 | 43.9024 | 22 | 3 | 21 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 82.3529 | 2 | 0 | 1 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 98.0815 | 22 | 2 | 22 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m0_e0 | het | 86.6667 | 86.6667 | 86.6667 | 98.2639 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.6131 | 93.8272 | 97.4684 | 73.9274 | 76 | 5 | 77 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.3793 | 86.8852 | 96.3636 | 58.3333 | 53 | 8 | 53 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 92.9577 | 91.6667 | 94.2857 | 75.0000 | 33 | 3 | 33 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.8333 | 94.9153 | 98.8304 | 69.3548 | 168 | 9 | 169 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.9394 | 91.1765 | 96.8750 | 67.6768 | 62 | 6 | 62 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.1088 | 57.6087 | 96.3636 | 60.1449 | 53 | 39 | 53 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3782 | 94.1935 | 98.6667 | 81.3665 | 146 | 9 | 148 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.0097 | 97.9592 | 96.0784 | 82.1678 | 48 | 1 | 49 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m1_e0 | * | 95.0226 | 92.1053 | 98.1308 | 84.4477 | 105 | 9 | 105 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | * | 95.1111 | 92.2414 | 98.1651 | 85.7516 | 107 | 9 | 107 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | hetalt | 90.3704 | 84.7222 | 96.8254 | 79.8077 | 61 | 11 | 61 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7823 | 99.6892 | 99.8755 | 54.6328 | 1604 | 5 | 1604 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6740 | 99.4939 | 99.8549 | 58.0900 | 1376 | 7 | 1376 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.7143 | 78.5714 | 94.2857 | 95.4368 | 33 | 9 | 33 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | * | tech_badpromoters | * | 99.3671 | 100.0000 | 98.7421 | 47.8689 | 157 | 0 | 157 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | * | tech_badpromoters | het | 98.7179 | 100.0000 | 97.4684 | 44.7552 | 77 | 0 | 77 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7268 | 99.5907 | 99.8632 | 46.2500 | 1460 | 6 | 1460 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5914 | 99.4172 | 99.7661 | 48.7717 | 853 | 5 | 853 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | ti | map_l250_m0_e0 | homalt | 99.1945 | 98.8532 | 99.5381 | 90.7121 | 431 | 5 | 431 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2353 | 83.3333 | 93.7500 | 86.7769 | 30 | 6 | 30 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | tv | map_l125_m0_e0 | homalt | 99.6615 | 99.4147 | 99.9095 | 69.6595 | 2208 | 13 | 2208 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m1_e0 | homalt | 99.4138 | 99.0654 | 99.7647 | 86.4065 | 848 | 8 | 848 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e0 | homalt | 99.4647 | 99.1462 | 99.7852 | 87.5551 | 929 | 8 | 929 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l250_m2_e1 | homalt | 99.4698 | 99.1543 | 99.7872 | 87.6462 | 938 | 8 | 938 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | tech_badpromoters | * | 98.6301 | 100.0000 | 97.2973 | 49.3151 | 72 | 0 | 72 | 2 | 0 | 0.0000 | |
| egarrison-hhga | SNP | tv | tech_badpromoters | het | 97.0588 | 100.0000 | 94.2857 | 41.6667 | 33 | 0 | 33 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m1_e0 | hetalt | 73.9130 | 60.0000 | 96.2264 | 93.4243 | 24 | 16 | 51 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e0 | hetalt | 73.6278 | 59.5238 | 96.4912 | 93.6947 | 25 | 17 | 55 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e1 | hetalt | 72.5594 | 58.1395 | 96.4912 | 93.8245 | 25 | 18 | 55 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | map_l250_m0_e0 | homalt | 98.1818 | 100.0000 | 96.4286 | 97.2305 | 25 | 0 | 54 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 75.0000 | 90.5882 | 0 | 0 | 6 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 66.6667 | 96.5909 | 0 | 0 | 4 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 66.6667 | 90.1639 | 0 | 0 | 4 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 88.8889 | 95.1087 | 0 | 0 | 16 | 2 | 0 | 0.0000 | |