PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50901-50950 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.9189 | 98.3871 | 99.4565 | 84.6603 | 366 | 6 | 366 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.3740 | 97.5806 | 99.1803 | 86.8888 | 242 | 6 | 242 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | segdup | homalt | 99.7222 | 100.0000 | 99.4460 | 94.1708 | 359 | 0 | 359 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6854 | 97.7431 | 99.6460 | 66.1879 | 563 | 13 | 563 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7333 | 100.0000 | 99.4681 | 59.3514 | 374 | 0 | 374 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7093 | 100.0000 | 99.4203 | 57.3020 | 343 | 0 | 343 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | * | 97.0588 | 96.1165 | 98.0198 | 86.6755 | 99 | 4 | 99 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m0_e0 | het | 97.5207 | 98.3333 | 96.7213 | 87.5000 | 59 | 1 | 59 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_siren | homalt | 98.8506 | 99.2308 | 98.4733 | 81.7803 | 129 | 1 | 129 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7136 | 95.3704 | 98.0952 | 88.4995 | 103 | 5 | 103 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.3357 | 93.9394 | 96.7742 | 87.8431 | 62 | 4 | 60 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9984 | 90.5660 | 97.7011 | 85.4515 | 96 | 10 | 85 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 50.0000 | 50.0000 | 50.0000 | 83.3333 | 2 | 2 | 2 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | het | 94.8454 | 93.8776 | 95.8333 | 88.5442 | 46 | 3 | 46 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | func_cds | * | 99.1720 | 99.4444 | 98.9011 | 32.5926 | 179 | 1 | 180 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | func_cds | het | 97.5068 | 98.3051 | 96.7213 | 38.3838 | 58 | 1 | 59 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5215 | 99.1930 | 99.8523 | 76.2248 | 1352 | 11 | 1352 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7912 | 100.0000 | 99.5833 | 75.5601 | 478 | 0 | 478 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7085 | 99.5633 | 99.8541 | 71.1368 | 1368 | 6 | 1369 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6269 | 100.0000 | 99.2565 | 64.4180 | 267 | 0 | 267 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.2806 | 99.5192 | 99.0431 | 78.4758 | 207 | 1 | 207 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.6900 | 99.1228 | 98.2609 | 83.5479 | 113 | 1 | 113 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.0798 | 98.7768 | 99.3846 | 81.8942 | 323 | 4 | 323 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.1176 | 98.8270 | 99.4100 | 83.4553 | 337 | 4 | 337 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1228 | 98.8338 | 99.4135 | 83.7309 | 339 | 4 | 339 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.4772 | 97.9798 | 98.9796 | 85.7765 | 194 | 4 | 194 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.5000 | 98.0100 | 98.9950 | 87.6012 | 197 | 4 | 197 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.5222 | 98.0392 | 99.0099 | 87.7204 | 200 | 4 | 200 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m0_e0 | * | 89.3617 | 87.5000 | 91.3043 | 97.4099 | 21 | 3 | 21 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m0_e0 | het | 82.7586 | 80.0000 | 85.7143 | 97.7199 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2973 | 100.0000 | 94.7368 | 68.5950 | 36 | 0 | 36 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.1228 | 97.1074 | 99.1597 | 67.2627 | 235 | 7 | 236 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5507 | 100.0000 | 97.1429 | 69.4323 | 68 | 0 | 68 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1406 | 96.7672 | 99.5536 | 69.6682 | 449 | 15 | 446 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5392 | 100.0000 | 99.0826 | 66.3060 | 216 | 0 | 216 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 85.8974 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e0 | homalt | 93.9394 | 93.9394 | 93.9394 | 87.0588 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m2_e1 | homalt | 93.9394 | 93.9394 | 93.9394 | 87.3563 | 31 | 2 | 31 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | * | 88.8889 | 83.0189 | 95.6522 | 88.3838 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m1_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 90.0662 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e0 | * | 88.8889 | 83.0189 | 95.6522 | 89.6861 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e0 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.1765 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e1 | * | 88.8889 | 83.0189 | 95.6522 | 89.9563 | 44 | 9 | 44 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_l125_m2_e1 | homalt | 86.6667 | 86.6667 | 86.6667 | 91.5254 | 13 | 2 | 13 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7135 | 99.5423 | 99.8852 | 59.7783 | 1740 | 8 | 1740 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3133 | 98.8433 | 99.7877 | 85.1420 | 940 | 11 | 940 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5294 | 99.2958 | 99.7642 | 84.2672 | 846 | 6 | 846 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.8406 | 99.7395 | 99.9420 | 62.2220 | 3446 | 9 | 3446 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 80.9524 | 70 | 4 | 70 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.1507 | 91.8919 | 94.4444 | 87.7551 | 34 | 3 | 34 | 2 | 2 | 100.0000 | |