PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50651-50700 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | homalt | 54.9108 | 37.8576 | 99.9213 | 85.2772 | 2541 | 4171 | 2539 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | hetalt | 89.7041 | 82.1256 | 98.8235 | 43.1438 | 170 | 37 | 168 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.1446 | 22.7273 | 88.2353 | 99.4016 | 15 | 51 | 15 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | homalt | 64.8122 | 47.9547 | 99.9463 | 76.1862 | 3728 | 4046 | 3722 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | homalt | 55.1813 | 38.1207 | 99.8832 | 84.5557 | 1712 | 2779 | 1710 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | HG002complexvar | hetalt | 90.9054 | 83.8710 | 99.2278 | 44.0605 | 260 | 50 | 257 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.4144 | 87.9771 | 99.5680 | 73.7230 | 461 | 63 | 461 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 63.4921 | 48.7805 | 90.9091 | 96.4630 | 20 | 21 | 20 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 60.0000 | 46.1538 | 85.7143 | 98.6805 | 12 | 14 | 12 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | * | 38.0148 | 23.5294 | 98.9011 | 99.0675 | 180 | 585 | 180 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m0_e0 | het | 38.3099 | 23.7762 | 98.5507 | 99.1755 | 136 | 436 | 136 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | decoy | * | 80.0000 | 80.0000 | 80.0000 | 99.9657 | 8 | 2 | 8 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | decoy | het | 78.9474 | 83.3333 | 75.0000 | 99.9698 | 5 | 1 | 6 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.6805 | 83.0746 | 99.8195 | 58.2831 | 1124 | 229 | 1106 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 60.0000 | 99.8457 | 0 | 0 | 3 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 94.5946 | 0 | 0 | 2 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 85.7143 | 94.4000 | 0 | 0 | 12 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 90.4762 | 96.7643 | 0 | 0 | 19 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 81.8182 | 96.9101 | 0 | 0 | 9 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 92.3077 | 97.0721 | 0 | 0 | 24 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 83.3333 | 97.4737 | 0 | 0 | 10 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 92.5926 | 97.2644 | 0 | 0 | 25 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 83.3333 | 97.7143 | 0 | 0 | 10 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 93.1034 | 97.1202 | 0 | 0 | 27 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 84.6154 | 97.5655 | 0 | 0 | 11 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 84.6154 | 96.8675 | 0 | 0 | 11 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 95.4545 | 94.7743 | 0 | 0 | 42 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 33.3333 | 96.8085 | 0 | 0 | 1 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 94.3662 | 0 | 0 | 2 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 89.4737 | 96.8543 | 0 | 0 | 17 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 91.3043 | 96.4615 | 0 | 0 | 21 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 93.3333 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 50.0000 | 92.8571 | 0 | 0 | 2 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 80.0000 | 87.6543 | 0 | 0 | 8 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 78.9474 | 0 | 0 | 2 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_siren | * | 0.0000 | 0.0000 | 84.6154 | 95.9752 | 0 | 0 | 11 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | decoy | * | 22.2222 | 16.6667 | 33.3333 | 98.5915 | 1 | 5 | 1 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | decoy | het | 28.5714 | 25.0000 | 33.3333 | 98.0892 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 91.0448 | 10 | 2 | 10 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m1_e0 | * | 84.0000 | 77.7778 | 91.3043 | 90.1709 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e0 | * | 84.0000 | 77.7778 | 91.3043 | 90.8000 | 21 | 6 | 21 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m2_e1 | * | 82.5000 | 75.0000 | 91.6667 | 90.5138 | 21 | 7 | 22 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m1_e0 | * | 83.2000 | 80.0000 | 86.6667 | 91.0180 | 12 | 3 | 13 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e0 | * | 85.1927 | 82.3529 | 88.2353 | 90.6593 | 14 | 3 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l150_m2_e1 | * | 82.6772 | 77.7778 | 88.2353 | 90.7104 | 14 | 4 | 15 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 75.6665 | 62.1622 | 96.6667 | 91.4651 | 23 | 14 | 58 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 57.3529 | 42.8571 | 86.6667 | 94.8980 | 6 | 8 | 13 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 72.7273 | 61.5385 | 88.8889 | 95.1872 | 8 | 5 | 16 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 72.1519 | 60.0000 | 90.4762 | 95.0237 | 9 | 6 | 19 | 2 | 1 | 50.0000 | |